Sinocyclocheilus grahami (golden-line barbel): 107558064
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Entry
107558064 CDS
T04918
Symbol
ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgh03041
]
107558064 (ythdc2)
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107558064 (ythdc2)
Spliceosome [BR:
sgh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107558064 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
HA2_N
Ank_2
DEAD
Motif
Other DBs
NCBI-GeneID:
107558064
NCBI-ProteinID:
XP_016097162
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MARCEQMMNMIRKRIPQFLLDDCCRSGIPCRIFCTQPRRLATIAVAERVAAERGEKIGQT
IGYQIRLESRVSPKTLLTFCTSGVLLRTLMSGDEALSTVTHVIVDEVHERDGLTDFLLTK
MKELVQKTPSLKLILSSATLDVNLFVRYFGACPVIHIKGCPYEVKQLFLEDILRTTGYTN
KDMMKYKKEAQKEERQQTSLTEWCDARLDVLQPEAPREKTHTCVLQENDLLDDGGDSVFS
QMSEKDVATLEPWLLREMDACISNIFLNQDADAFVQLFNLILNENISVDYRHSETSATPL
MVSSGRGFLSQMEQLLSMGANANAKASNSWTALDWAKHFNQTEAVDLLESHIWCVEAGQL
DESSLVQTAASELNPEDQELLKAYHHSFDDEKVDLDLILHLLSNICQSSDEGAVLIFLPG
YDEIVSLRDRILFDDKRFTDHQQRFQVFILHSSMQTSDQKKVLKNTPKGVRKIILSTNIA
ETSITVNDVVFVIDSGKVKEKAYDALSNVTMLKMVWISKASALQRKGRAGRCRPGVCFHL
FSRLRFNNMLEHQIPQLLRMPLQELCLHTKLLAPVTCPIAEFLSKAPEPPHLNTVKHAVQ
MLKTIDAMDPWENLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAHRDPFV
LPAQAAQKRAAMLCRKRFTANTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATME
IIVGMRTQLLGQLRATGFVRARGGGDIRDVNQNSENWAVVKAALVAGMHPNLIHVERDSL
SLMGSREKKVRFHPTSVLSQPQYKKIPPANGQAAAVESLPTDWLIYDEMTRAHRIASVRC
CSVVTPLTVAIFAGSAKLPSSALQEPAVHRGADAVNDSSDSEVEDRSSARLAHISIDDWL
HFKLHRETAELMFGLRQRWQSLFLRRIRSPSKSCSQLDEATIRSLVSVLLAEEQSAGLQQ
PTGIGQRPRPMTSDDPPQTPASRSAAEQERSSPDRPRLASQLKNHRALHCKHLGDESGPV
KSTDGPSSPTSGTRCSSPLRSSVRYFIMKSSNMRNIDLSQQRGIWSTTPNNELKLTRAFV
ESSAVFLIFSVQGSGHFQGYARMASAVSGERCLDWGSTGLGGVFGVEWIRKEGLPFQLTQ
QLLNPWNDNKRVQISRDAQELEPQTGSQLLQLWERI
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggctcgctgtgagcagatgatgaacatgatccgaaaaaggatcccgcagttcctgctg
gatgactgctgtcggagcgggattccctgccggatcttctgcactcagcccaggaggctg
gcgaccatcgctgtggcggagcgcgtggcggccgagcgcggcgagaagatcggacagacc
atcggctatcagatccgtctggagagcagagtttcccctaaaaccctgctgacgttttgc
acgagtggagttctgctgcggacgctgatgtccggagacgaagccctgtccaccgtcacg
catgtcatcgtggacgaggtgcacgagcgagacggcctgaccgacttcttactcacgaag
atgaaggagcttgtccagaagacgccgtcgctgaagctgatcctttccagcgctactctg
gacgtcaatctgtttgtcagatacttcggagcctgtcctgttattcacatcaaaggttgt
ccatatgaggtcaagcagctgtttctggaggatatcctgcggaccaccggctacacaaac
aaagacatgatgaagtacaagaaggaggcgcagaaagaggagagacagcagacgtctctg
accgagtggtgtgacgcccgtctagacgtcttacagccggaggctccgagggaaaagaca
cacacttgtgtcctgcaggagaacgacctgctggatgacggcggcgacagtgtcttcagt
cagatgagcgagaaggacgtggccacactggagccctggctgctcagagaaatggacgcc
tgcatctccaacatcttcttgaaccaagacgccgatgccttcgtgcagctcttcaatctg
atcctgaacgagaacatcagcgtggattacagacacagcgagacgagcgccacgccgctg
atggtgtcctccggacggggttttctcagccagatggagcagctcctcagcatgggtgcg
aacgccaacgccaaagcctccaacagctggacggctcttgactgggccaaacacttcaat
caaactgaggctgtagatctgctggagtctcacatatggtgtgttgaagcaggtcagctg
gacgagtcgtctctggttcagacggctgcatcagagctgaatcctgaggaccaggagctg
ctcaaagcgtatcatcacagcttcgacgatgagaaagtcgacctggatctcatcctgcat
ctgctctccaacatctgccagagctctgacgagggcgcagtgttgatatttctgccgggc
tacgatgagattgtctctctgagagatcgcatcctctttgatgataaaaggtttacagat
caccagcaaaggtttcaggtgttcatactacactctagtatgcagacgtcagaccagaag
aaggttttgaagaacacgcctaaaggtgttcgcaaaataattctctcgactaacatcgca
gagaccagtattacagtcaacgatgttgtttttgtcatcgactccggcaaagttaaagag
aaagcctatgacgctctgagtaacgtgaccatgctgaagatggtttggatatcgaaggcc
agcgctctgcagaggaagggcagagcgggccgctgcagaccaggtgtctgtttccatctc
ttcagccgtctgaggttcaacaacatgctggagcatcagattcctcagctgctgcgcatg
ccgctacaggagctgtgtctgcacactaaactgctggctcccgtcacctgtccgatcgcc
gagttcctgtctaaagcaccggagccgcctcacctgaacacagtcaaacacgccgtacag
atgctgaagaccatcgacgctatggacccctgggagaacctgacggagctgggttatcac
ctcgctgatctgcccgtggagccacatttagggaagatggttctgtgtgcggtggtgctg
aaatgtttggaccccatcctcaccatcgcctgcacactcgcccacagagaccccttcgtt
cttcccgctcaagccgctcagaagcgcgccgccatgctgtgcagaaaacgcttcaccgcc
aacaccttcagcgaccacatggctctgctccgcgcctttcaggcctggcagaaggctcgc
agtgatggctgggaaagagcgttctgcgagaagaacttcctctctcaggccacaatggag
atcatcgtcgggatgcgaacacagcttttgggacagcttcgagctacaggcttcgtgcga
gcgagaggcggcggggatatccgggatgttaaccagaactccgagaactgggccgtagtg
aaagctgctctggtcgctggcatgcatcccaacctgatccatgtggagcgggacagtctg
agcctcatgggctccagagagaagaaggtccgcttccacccgacctctgtcctcagccag
ccgcagtacaagaagatccctccagccaatggccaggcggcagcagtggagtccctgccc
actgattggctgatttatgatgagatgacccgcgcgcacaggatcgccagtgtcaggtgc
tgctctgtggtcacgcccctcaccgtcgccatcttcgcaggaagtgccaaactcccaagc
tccgccctacaggaacccgccgtccacagaggagctgacgctgtgaatgacagcagtgac
agtgaggtggaggatcgctcgagcgctcgtctggctcacatcagcatcgacgactggctc
cacttcaaactccaccgagagacggcggagctgatgttcggtctgaggcagcgctggcag
agtctgttcctgcggcggatccgctctccgtctaagtcctgctctcagctggacgaggcc
accatccgctcgctggtgtcggttctgttggccgaggagcagagcgcaggcctgcagcag
cccaccggcatcggccagagacctcgacctatgacctccgacgatcctccacagacacca
gccagccgcagcgcagcggagcaggagcgcagcagcccagacaggcctcggctggcgtct
cagctgaagaatcacagagctcttcactgcaaacacctgggagacgagagcggccccgtg
aagagcaccgacgggccctcgtccccgacctcgggaacacgctgctcgtctccgctgcga
tcgagcgtccgctacttcatcatgaagagcagcaacatgaggaacatcgatctgtcccag
cagaggggaatctggtccacgacgcccaacaacgagctcaagctcacgcgagccttcgtc
gagagcagcgccgtcttcctcatcttctccgttcagggatccggacacttccagggttac
gcgcgcatggcgtcggcggtcagcggcgagcgctgtctggactggggttcgaccggtctg
ggcggtgtgttcggggtggaatggatccgtaaggagggtctgccgttccagctcacgcag
cagctgctgaacccctggaacgacaacaagagagtgcagatcagccgagacgctcaggaa
ctggagccgcagacaggaagtcagttactgcagctctgggagcgaatctga
DBGET
integrated database retrieval system
