Sinocyclocheilus grahami (golden-line barbel): 107561997
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Entry
107561997 CDS
T04918
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04518
Integrin signaling
sgh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107561997
04518 Integrin signaling
107561997
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107561997
09142 Cell motility
04820 Cytoskeleton in muscle cells
107561997
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107561997
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107561997
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
107561997
NCBI-ProteinID:
XP_016102039
LinkDB
All DBs
Position
Unknown
AA seq
1388 aa
AA seq
DB search
MFSFVDIRLGLLLAAAVLVVRGQGEDDSSFGSCTLDGQNYNDKDVWKPEPCQICVCDSGT
VMCDDVLCEDTAECANPEIPDGECCPICPDDYVIDPSFGPRPPNGDHQVNYVIDPSFGPR
PPNGDHQEPVGPNGDPGPPGPPGRDGIPGENGLPGPPGPPGTPGLGGGSFLSQMAYGSEK
SSGPALPGPPGPMGPRGLPGPAGSSGPQGFTGPPGEPGEAGAPGPMGSRGPSGPPGKNGE
DGEAGKSGRPGERGSAGPQGARGFPGTPGLPGIKGHRGFSGLDGAKGDTGPAGPKGESGV
PGESGTPGAIGPRGLPGERGRPGSPGPSGARGNDGNTGGAGPPGPTGPAGSPGFSGGAGA
KGETGPAGGRGSEGPQGARGEPGNPGPAGGAGPAGAPGADGAPGGKGSPGAAGIAGAPGF
PGARGPPGPLGPSGALGPKGNNGDPGLQGNKGDAGPKGEPGSVGPQGLAGPAGEEGKRGA
RGEPGGAGPVGPLGGRGAPGNRGLPGTDGPPGPGGEAGKSGERGVVGPPGALGAPGKDGD
VGAPGSPGPAGPAGEKGEQGSAGSPGFQGLPGTQGATGETGKPGDQGVPGEAGPHGPSGA
RGDRGFPGERGSTGPAGPTGSRGAPGSTGNDGAKGEPGAAGAPGGVGPAGMQGMPGERGA
GGMPGSRGDRGDGGPKGPDGAPGKDGLRGMTGPIGSSGPSGAPGEKGESGAVGPPGLTGT
RGSPGERGEVGPPGPAGFAGPPGANGQSGAKGETGDTGSKGDAGASGPAGPVGAAGPQGP
AGATGAKGARGGAGPPGATGFPGAAGRVGPPGSAGAAGPPGPTGAVGKEGQRGVRGERGP
SGRPGEAGAAGPSGPSGEKGSVGPDGPAGPAGSPGPPGVIGSRGIVGLSGQRGERGFSGL
PGPSGEPGKQGPSGLLGERGPPGPMGPPGLGGAPGEAGREGNPGHDGAPGRDGPPGPKGD
RGESGNSGSPGAPGAPGAPGPLGPSGKNGDRGEAGPSGPAGPSGPAGARGGLGPAGTRGD
KGESGEAGERGMKGHRGFSGMTGVPGPPGSSGDQGPAGPSGAAGPRGPSGSNGVAGKDGM
NGIPGPIGPPGPRGRSGEMGPAGTPGLPGPPGPPGPAGIGEPFLPMPQGEKGPDPLRGGY
RADDASVRDRDAEVDTTLKSLSQKIENIRSPEGTQANPARMCRDLRMCHPDWKSGSYWVD
PNQGSPLDAIKVFCNMETSETCVSPSQNTIPMKNWYTSKNIREKKHVWFGESMPNGFQFQ
YGSEGSDPEDVNIQLTFMRLMSNEASQNITYHCKNSIAYMEEATGNLKKALLLQGSNDIE
IRAEGNSRFTYRVSEDGCTSHTGTWGKTVIDYKTTKTSRLPIKKDRTPKTTGRPILHGTG
RPLSAIFT
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggttagggctgctgctcgccgcagcggtccttgtggtg
agaggacaaggagaggatgatagctcattcggtagctgtacattggacggtcagaattac
aacgacaaggatgtatggaaacctgagccctgccaaatctgcgtctgcgacagcgggacg
gtcatgtgcgacgacgtgctctgcgaagatacagcagaatgtgccaatccagagattccc
gacggagaatgctgccccatctgccccgacgattatgtgattgatccttcatttggtcct
agacctccaaatggtgatcaccaggttaattatgtgattgatccttcatttggtcctaga
cctccaaatggtgatcaccaggaacctgttggtccaaacggagaccccggtcctccaggg
cctcctggcagagacggtattcccggagagaacggactccctggacctcctggtcctcct
ggaacccctggcctcggtggtggatctttcctttctcaaatggcttatggcagtgagaaa
tccagcggccctgctctccccggtccaccaggccccatgggtccccgtggcctccctgga
cctgcaggttcatctggccctcagggattcactggccccccaggcgagcctggtgaggct
ggtgctcctggtccaatgggttctcgcggtccttccggtcctcctggaaagaatggagag
gatggtgaagctggcaaatctggtcgtcctggtgagcgcggatccgctgggcctcagggt
gctcgtgggttcccaggaacccctggactccccggcatcaagggacacagaggtttctct
ggtctagatggagctaagggagacactggacctgctggacctaagggagagtctggtgtt
cctggtgagagtggtactcctggagccataggtcctcgtggtttgcccggtgagagaggt
cgccctggttctcctggcccttctggtgcccgcggtaatgatggcaacactggcggtgcc
ggacctcccggacccactggccctgctggttctcctggtttctctggtggtgctggtgct
aagggagaaactggccctgctggaggtcgtggttcagagggacctcagggagcccgtggt
gagcctggtaaccctggacctgctggtggcgccggtcctgctggagctcctggtgctgat
ggtgctcctggtggcaaaggatctcctggtgctgctggtattgctggcgctcctggtttc
ccaggtgcccgtggacctcctggaccccttggcccttctggtgctcttggccccaaagga
aacaatggtgatccaggtctccaaggcaataagggagatgccggtcctaagggagaacct
ggctcagttggacctcaaggtctcgccggacctgctggtgaggaaggaaagagaggagct
cgtggtgagcctggtggtgctggacctgtcggaccccttggaggccgtggtgcccctggt
aaccgtggtcttcctggtactgatggacctcccggacctgggggtgaggctggtaagtct
ggtgagagaggtgttgttggacctcctggtgctttgggcgctcctggcaaggatggggat
gttggtgctcctggttctcctggacctgctggcccagctggagagaagggagaacaggga
tccgccggttctcctggattccagggtctgccaggtacacagggtgccactggtgagact
ggcaaacctggtgaccagggtgttcctggtgaagctggtcctcatggtccatctggtgca
agaggtgacagaggtttcccaggtgagcgtggtagtactggacctgctggccctaccgga
tctcgtggagctcctggttctactggtaatgatggtgctaagggagagcctggtgccgct
ggagcccctggtggtgttggtcccgctggaatgcagggtatgcctggagagcgcggcgct
ggcggcatgcctggaagcagaggagacagaggtgatggtggacccaagggccctgatgga
gctcctggtaaggatggtctgcgtggaatgactggccctattggatcttctggaccttct
ggtgctcctggtgagaagggagagtctggtgctgttggacctccaggattgactggtact
cgtggttcccctggtgagcgtggtgaggtcggtccacctggacccgctggttttgctgga
cctcctggtgccaacggacagtctggtgctaagggagagactggtgacaccggatccaag
ggtgatgctggagcttctggacctgctggacccgtcggagccgctggcccgcagggacct
gctggtgctactggagctaagggtgctcgtggtggtgctggacctcctggtgctactggt
ttccctggtgctgctggcagagtcggacctccaggttctgctggtgctgctggaccccca
ggcccaactggtgctgtcggtaaagaaggacaaagaggtgtccgtggtgagagaggaccc
tctggtcgccctggagaggctggcgccgctggaccctcaggaccctctggagagaagggt
agcgtcggtcccgatggtcctgctggtccagctggttctcctggaccacctggtgttatt
gggtcccgtggtattgttggtctttctggacaaagaggagagagaggattctccggtctc
cctggaccttctggagagccaggaaagcagggaccctctgggcttttaggtgagcgtgga
cctcctggacctatgggacctcctggactgggtggagctcctggtgaagctggacgtgag
ggtaaccctggacatgatggtgctcctggccgtgatggtccacctggaccaaagggagac
cgtggtgagtctggcaactctggttctcctggcgcccctggtgctcctggagcccctggc
cctttgggtccttctggcaagaatggtgatcgtggagaggctggtccctctggtcctgct
ggtccttccggtcctgctggtgctcgtggtggcctaggtccagccggtacacgtggagac
aagggtgagtctggtgaggctggggagagaggcatgaagggacaccgtggcttcagtgga
atgactggagttcctggacctcctggatcctctggtgaccaaggacccgccggaccatct
ggcgctgctggacctcgtggaccttctggctccaatggcgttgctggtaaggatggtatg
aacggtatacctggccccattggacctcctggaccccgtggtcgctctggagagatggga
cctgctggtactcctggtcttcctggacctcctggtcctcctggacctgcaggcatcggt
gagccattccttcctatgccccagggcgagaagggtccagatcctctgcgtggaggctac
agagctgatgatgctagcgttcgtgaccgcgatgctgaggtggatactaccctaaaatct
ctgagccagaagattgagaacatccgtagccccgaaggaacccaggccaaccctgcccgc
atgtgccgtgacctcaggatgtgccatcctgattggaagagcggttcctactgggtggat
cccaaccagggctctcctctggatgccatcaaggtcttctgcaacatggagactagtgag
acctgcgtcagcccatctcagaacaccattcccatgaagaactggtacactagcaagaac
atcagagagaagaagcacgtttggttcggagagtccatgcctaatggcttccagttccag
tatggcagcgagggctctgatccagaggatgttaacatccaactgaccttcatgcgcctg
atgtccaacgaggcttctcagaacatcacctaccactgcaagaacagcatcgcatacatg
gaagaggccacgggcaacctcaagaaggctctgctcctgcagggctccaacgacatcgag
atcagagcggagggcaacagccgcttcacatacagagtcagcgaggatggctgcacgtca
cacactggcacatggggcaagacagtcattgactacaagacaacgaaaacatctcgtctg
ccaataaagaaggataggacaccaaaaacgactggtcgccctattttacatggtacgggt
cgccccctcagtgccatctttacgtga
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