Sinocyclocheilus grahami (golden-line barbel): 107562371
Help
Entry
107562371 CDS
T04918
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03020
RNA polymerase
sgh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107562371
09124 Replication and repair
03420 Nucleotide excision repair
107562371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgh03021
]
107562371
03400 DNA repair and recombination proteins [BR:
sgh03400
]
107562371
Enzymes [BR:
sgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107562371
Transcription machinery [BR:
sgh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107562371
DNA repair and recombination proteins [BR:
sgh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107562371
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
107562371
NCBI-ProteinID:
XP_016102481
LinkDB
All DBs
Position
Unknown
AA seq
1175 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPXARLRNLTYS
APLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDP
GGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMA
RGGQGVKKSAIGQRIVSTLSYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMV
KPSLDEAFVIQEENVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKK
AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQK
IIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSH
LRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI
LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV
SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGV
VEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR
NAYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPARINSIVA
IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMR
HAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELESTNRRYTKRDCSTFLRTSET
GIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGI
TPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYH
LRGNEVLYNGFTIXASKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRS
RDGGLRFGEMERDCQIAHGAAPFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRG
CRNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaagacgaagatatccagtatgatgaagatgatgatgaaatcacccctgat
ttgtggcaggaggcctgttggattgttatcagctcatactttgacgaaaagggtttggtg
cgacagcagctggactcattcgatgagttcatccagatgtctgtgcagaggattgtggag
gatgctccacccattgacctgcaggctgaggcccagcacacatctggagaggtggaggaa
ccgcctcggtacctcctgaagtttgagcaaatctacctgtccaaacctactcactgggaa
agagatggcgctccctcgcctatgatgccannagccagactccgaaatctcacgtattct
gcccctctgtatgtggacatcacaaagaccatcataaaggatggggaagagcaacagcag
acacagcatcagaaaaccttcattggcaaaattcccatcatgctccgttccacgtactgt
ctcctgagcggcctgacggatcgtgatctttgtgagttgaacgagtgcccactggaccct
ggaggctacttcatcatcaatggttcagagaaggtcctgattgctcaagagaagatggcc
actaacacagtatatgtgtttgccaagaaagactccaagtatgcttacacaggagagtgc
aggtcgtgtctggagaactcctccagacccaccagtaccatctgggtcagcatgatggcc
cgtggagggcagggagtaaagaaaagtgccatcggccagaggattgtttccactctgtcg
tatatccggcaggaagtacccatcatcattgtattccgtgctttgggatttgtgtcagat
agagacatcctggaacacatcatctatgactttgacgatcctgagatgatggaaatggtg
aagccatctttggacgaggcctttgtgattcaggaagagaatgtggctctgaacttcatt
ggctccagaggggccaaacctggtgtcactaaagaaagaagaatcaaatatgctaaagag
gttttgcagaaggaggtgctgccacatgttggtgtatcagatttctgcgaaaccaagaaa
gcatattttctaggttatatggttcacagactgctgttggccgctctgggcagacgagag
ctggatgacagagatcactatggcaacaagagacttgatctcgctggacccctgcttgct
ttccttttcagaggaatgttcaagaacctactaaaggagatcagaatttatgcacagaag
attattgaccgggggaaggactttaatctcgagctggccattaagactcgcatcatttct
gatggacttaagtactctctggccacgggtaactggggggatgtgaagaaagcccatcag
gccagagctggagtatctcaggtgttgaacaggttgaccttcgcttccactctttcccac
ctgcgccgtgtaaactcgcctataggacgagatggcaagctggccaaacccaggcagctt
cataacacattgtggggtatggtgtgccctgctgagaccccagagggccatgctgtaggt
ttggtgaagaatctagcgctcatggcctacatttctgtgggatctcagccatcccccatc
ctggagttcttggaagagtggagcatggagaacctggaggaaatctcacccgctgccatt
gcagatgcaactaagatttttgtgaatggttgctgggtgggtattcataaagaccccgag
cagctgatgaacacactgcggaaactgaggagacagatggacatcatcgtgtctgaggtg
tcaatgatccgagatattcgtgagagggagatcaggatctacacagatgctggcaggatc
tgccgtccactgcttattgtagaaaaacagaaacttcttctgaagagacgacatattgac
cagctcaaagagagagagtacaacaattacagttggcaggacctggtagccagtggtgtg
gttgaatatattgacacactagaggaggagactgtgatgttggccatgacccctgatgac
cttcaggagaagggcgtggcttattgctccacctatacacattgtgagattcacccgtcc
atgattttgggtgtctgtgcatctattattcccttccctgatcacaaccagtctcccaga
aacgcgtaccagtctgctatgggtaaacaagccatgggagtttacatcaccaacttccat
gtgcgtatggataccctggcacatgtgctctactacccccagaaacccctagtcacaact
cgttccatggagtacctgcgctttagagagctgccggcacgtatcaattctattgtggct
attgcatcatatactggatacaaccaggaagattctgtcatcatgaaccgttcggctgtg
gatcgtggattcttcaggtctgtgttctaccgctcatacaaggaacaggaatccaagaaa
ggctttgaccaggaagagatctttgagaaacccacccgagagacctgtcaaggtatgcga
catgcgatctatgacaagttggatgatgatggtttgattgctcctggtgtacgtgtgtct
ggcgaggatgttatcattggcaaaaccgtaacgcttccagagaatgacgatgaactggaa
agcaccaaccgtcgctacactaagagagactgcagcacattcctgcgcaccagcgaaacc
ggaattgttgaccaagtcatggtcacgctaaaccaagagggctacaagttctgcaaaatt
agggtccgttcagttcgtataccacaaattggagacaagtttgccagtcgtcacggtcag
aagggtacctgcggtatccagtacagacaagaggacatgccgttcacatgtgaaggaatc
actccagatatcatcatcaaccctcacgccatcccctccagaatgacagtcggccatttg
atcgagtgcctgcaggggaaggtgtctgctaacaaaggggagatcggtgatgccacgcca
ttcaacgatgctgtgaatgtacaaaaggtctccaacctgctgtcagaatacggttaccat
ctgagaggcaatgaggttctgtataatggcttcactatatgagcaagcaagctcacctct
cagatcttcatcggacccacatactaccagcgtctgaagcacatggtggatgataagatc
cactccagagcccgtggtccagtccagatcctcaacagacagcccatggagggtagatca
cgtgatggtgggctgcgttttggagagatggaacgtgactgtcagatcgctcacggtgcc
gctccgttcctaaaagagagacttttcgaggcctctgacccataccaggtccacgtctgc
aatctatgcggcctcatggccatagcaaacacccgcacgcacacttatgagtgcaggggc
tgccgcaacaagacacagatctctctggtgaggatgccgtacgcctgtaagctgttattc
caggagctgatgtctatgagcattgccccacggatgatgaccagctaa
DBGET
integrated database retrieval system
