Sinocyclocheilus grahami (golden-line barbel): 107562544
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Entry
107562544 CDS
T04918
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107562544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107562544
03041 Spliceosome [BR:
sgh03041
]
107562544
03009 Ribosome biogenesis [BR:
sgh03009
]
107562544
03016 Transfer RNA biogenesis [BR:
sgh03016
]
107562544
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107562544
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107562544
Spliceosome [BR:
sgh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107562544
Complex C
U4/U6.U5 tri-SnRNP related factors
107562544
Ribosome biogenesis [BR:
sgh03009
]
Eukaryotic type
Pre-60S particles
Helicases
107562544
Transfer RNA biogenesis [BR:
sgh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107562544
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
107562544
NCBI-ProteinID:
XP_016102666
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MADAFGEDLFSVFDEEQVVLPADEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQS
VLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDV
TINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDN
VHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYVFPAGGDGLHLVVDENG
EFREDNFNTAMQVLRDAGDTGGNAGGKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVII
FSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRG
IGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPARTVLFTSARKFDGKDFRW
ITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAVGKQLLKGSADPLNSAFHLTYNMVL
NLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKKLEEGYNAIRIPNEESVVTYYKIRQ
QLAKLGKEIEEFIHKPRYCLPFLQPGRLVRVKKEDLDFGWGIVVNFQKKTNVKAAVGDAE
PLFVVEVLLHCSKDSVKNAATEAAKPAGPGEKGEMQVVPVILHLITSISSVRLYIPKDLR
PYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIKDPALKKVIQKVEAFEHRMYTHPLHS
DPKLEAVYTLCEKKALIAGDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIE
MKGRVACEISSADELLLTEMVFNGLFNDLTAEQATALLSCFVFQENANEMPKLTEQLAGP
LRQMQECAKRIAKVSAEAKLDVDEDTYLNQFRPHLMDVVYTWANGSSFSQICKMTDVFEG
SIIRCMRRLEELLRQMCQAAKAIGNTELENKFATGKT
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagaagatttgttcagcgtgtttgatgaagaacaggtggttctt
cctgcagacgaggaatacactccactgaaaccacgcgttggaaaagcagctaaggagtac
ccgttcatactcgaccctttccagcgtgaggccatcctgtgcatcgataacaaccagtct
gtgcttgtgtcggcccacacatcggcaggaaagaccgtgtgtgcggagtatgccattgct
ctggctctccgagaaaagcagcgagtgatcttcacaagccccatcaaagctctgagcaat
cagaagtacagagagatgtacgaagagttccaggatgtgggtctgatgaccggtgacgtc
accattaaccccacggcttcctgcctggttatgaccaccgagattttgaggagcatgctg
tacagagggtcagaggttatgagggaggtggcgtgggtcatctttgatgagatccattac
atgagagactcagagcgtggagtggtctgggaggaaaccatcatccttctgccggacaac
gtgcatcatgtcttcctgtctgccaccattcccaacgctcgacagtttgccgagtggatt
tgtcaccttcacaaacagccctgccacgtggtgtacaccgactaccgccccactccactg
cagcactacgtctttccagcagggggcgatggactccaccttgtcgtggatgagaacgga
gagttcagagaagacaattttaacacagcaatgcaggtcctgagggatgcaggggacacg
ggaggcaatgctgggggcaaatgggaccccaaaggcagaaagggtggaaccaaaggtcca
tccaatgtctttaagattgtgaagatgatcatggaaaggaacttccagccggtgattatc
tttagcttcagtaagaaagaatgtgaggcctacgcactgcaggtggccaaactggatttc
aacacagacgacgagaagaaactggtggaagaagtgttcaacaacgccacagactgcctg
tctgatgaagacaaaaagctgccacaggtggagcatgttctgccattgctgaagagagga
attggaattcatcatggcggcctcctcccgatcctgaaagagaccattgagatcctgttc
tctgaggggctgctaaaggccttgtttgctacagaaacatttgccatgggaatcaacatg
cctgcaagaaccgtgctcttcaccagtgcgcgcaaatttgacggcaaagacttccgctgg
atcacctccggagagtatatccagatgtcaggacgtgctggcagaagaggaatggacgag
aggggaatagtcattttcatggtggatgagaagatgagccctgcggtgggcaaacagtta
ctgaagggttcggcggatcctctgaacagtgcgttccacctgacctacaacatggtgctc
aatctactgcgtgtggaggagatcaacccagagtacatgctggagaaatccttctaccag
ttccagcactatagagccgtgcctggtgttgtggagaagatgaaaaagctggaggagggg
tataatgcaatacgaatccctaatgaagagagcgtggtgacctactacaagatccgtcag
cagctggccaaactgggcaaagaaattgaggaatttattcacaaacctagatactgcctg
ccttttctgcagccgggcagactggtcagggtgaaaaaagaagatctggatttcggttgg
ggtatagtcgtcaatttccaaaagaagacaaatgtcaaggctgcagttggggatgctgag
ccgttatttgtggtggaggttctgctccactgcagcaaagacagcgtgaagaacgcggcc
acggaggcagccaaaccagcaggcccaggagaaaagggcgagatgcaggttgttcctgtg
attcttcatctcatcacctccattagctctgtgcgcctctacattcctaaagacctgcgg
ccgtatgacaaccgacagagcatgcttaaatccatacaggaggtccagaaacgtttccca
gatggcgttcctctgctagatcccatagacgacatgggtatcaaggatccagcgctgaag
aaggtcattcagaaggtggaggcgttcgagcacaggatgtacacgcaccccctgcacagc
gaccccaagctggaggccgtttacactctgtgtgagaagaaagcgctgattgcaggcgac
attaaagcggcaaagcgcgagctaaagaaagcacgtaccgtgctgcagatggacgagctg
aagtgcaggaagcgtgtgctgcggcgcctgggattcgccacttcctctgatgtcatcgag
atgaaaggtcgtgtggcctgtgagatcagcagtgcagatgagctgttgctgacagagatg
gtgtttaacgggctgttcaacgacctgacggcggagcaggccaccgcgctcctcagctgc
tttgtcttccaggaaaatgctaacgagatgcccaaactgacggagcagctggccggaccg
cttcgacagatgcaggaatgtgccaagcgtattgctaaggtgtccgcagaggccaagctg
gacgtggatgaggacacttacctgaaccagttccgcccgcacctgatggatgtggtctac
acctgggccaacggctcctcattctctcagatatgcaaaatgacagacgtgtttgaaggc
agtattatccgctgtatgcgcagattggaggagctcttgaggcagatgtgccaggcagcc
aaggccattggaaacacggagctggagaataagtttgccacgggtaagacatga
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