Sinocyclocheilus grahami (golden-line barbel): 107563163
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Entry
107563163 CDS
T04918
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sgh04131
]
107563163 (vps13a)
Membrane trafficking [BR:
sgh04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
107563163 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
107563163
NCBI-ProteinID:
XP_016103444
LinkDB
All DBs
Position
Unknown
AA seq
2988 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLSLGIWGGDAILRNLEIKENALSQLDIPFKVRAG
HIVCTLCLIFQTADQNWTPCLLDEKAKLFFKLVRLDNLFAYWNVNSELYSNHNPDEALRH
LKHSVAIQSTIPQDYHFIFRPISANAKLRMNPRSDVDFSSPKVDLVVNLPEVAVELSRPQ
YVSILELLGSVDMMTRNLPYRKYRPDVAVHTNAHQWWRYVITGILEVNVKPRLYMWSWQR
IRHHRQHVKKYREIYKNKITSKKPAESLLKELEETERTLDIFNITMARQQAEMEASKAGL
RIYRPGVKVEEEQSQGWFGWMWSWSGESGTQTKDVKTGGFDELMTPAEKAKLYAAIGYSD
TAVNPNLPKNFENMKIHFQLNRMSLSIKESREKPEIIQLSVIDLKAMLTQRPAAQAIKIS
AQLSSFEVSGLPRGRSAPILLSPRHVAGMKDTALLDLMFETNPLDASADQRLRIESQALE
IIYDAMTVNSMSAFFMPPKDLQLDELTNATLMKLEQFRDKTSTGLMYIIETQKVLDLKIN
LMASYVIVPENGFYDPKHNLAILDLGHFQMSSQSRVGLPQLSVGSSTLEDIMSRAYDSFD
VQLSSLQFLYTKAGGDWKRARPLRQSAFHILEPVDLKVVFSRAMVVTDSRMPKFKIYGEL
PLLSLRISDDKVRGVLALLSSIPLPESRPVPQTRAPQATPKSSKRGNTPQLTPRRPAIDD
LRASIIYGSDEELFFDAPSSPIEDLPFFEASTGSLQGSASDKRLFMVLKDPKKNMTEFLL
RFEISKLSIQLCRLSGREEVSVLHLFIDGLGTELKLRTFDMSSYTFLREICLECSEYLDS
EDKKVHLITTLDNTEEDLLTLEYVKADKNAPDFKTMYKNTEQLIKVNFSSLDVHLHTEAL
LNSINFLNNLLPPLKKEAQEEQPVLPKEEEEEEEEAKIEDSAVTKKSSCKKSKFEDVVNL
HIRADLNCLKVFIRGEKARISEISIEGLVSEVQMKKKCVEILANLKNIVILDCDKEALYK
KAVSIADKEVFDFRMVNHVDATEGDAYTDMHIVDTSVTLTVGCIQVIFLNKFMSSILAFI
NNFQEAKNALAEVTAQAAEKAATGVLELAERSTRISLDVDIKAPVVFLPQSSVSHNVIVA
DLGLVTVKNHFEMVSSPAHTKIPPVMDIMAVGLSDLKMYRTTFTDGQFKSELQLLKPVNM
DLSIKRNLSASWYHSIPDIQINAHLKPMSLILSQEDLTIVLKTLSENLSENSDAPPAPSS
PDKGDTVSTKDSQSSGGNTVVTAAVVEGPKTGKLKNTLKLDFKFDSMTLVLYSPNNNEIQ
LSDFRDESLKLAEFMLGTISTAVHMFSDSSMKASLKLTNCLLDDKRQRVKMITSRMMAMR
QGREGNVMVDMSYRQGRDGTVLDTLVQDLYLCASMEFLLTVADVFLKAMADGFSGSPKNK
QPASSSKDPAVPAAPVVAKTEMNIVVKNPEIVFVADLTRAEAPALVMTTQCELVMKNEPS
GQSMTAAISDLKVVACPLLREKREHNVTTVLQPCQVFFQSSQSPSQPQSIELSISSLTLK
VSPIILNTVITIQSALSPAAETPEELESPVPQDLWERRNLRDLKLWFLEEEEENVTRSVI
PLVPHGESLKMNIHTICLTLEAGVGHRTVPMLLAKASFQGNVKNWSTLINLHCHLDLEVN
YYNEMMGLWEPLLEPLDNEEKDGFRPWTLAMKMKKKPVSHSGVSDEVDGSVPDYKTVISF
TSKDQLNVTLSKCGLHMLSNLGTAFAEATKQTAESFQKDQAPFVVKNRLGLPVAVLHSEV
FRPIGKESKNRVVELQDGESLNMDYTHTAESSDQFSAMTSLSAKNYIQPTPVGHTTASVI
PLIKTGRDMHSVMHRDSGVTRFFVCQIYTAEGSKYVKIRSPFQIINHFSVAFRVYEGSEC
LGISLPTEEFCVPLGSYRAELSLQPVTEGEEQYDHSEGFTYNEVNQKPGECLEKTCHHQG
DSAQMLKINMVPLPDTVMSHSPEEEFDKPIILHLWPTVLLRNLLPYPITFKIKGNGDFPS
SLLKAGHSSQIHTAIMDFSTLELKLLGYLQQDWEAKYSLCSDCDEISFIRFLSLGEGEET
ETRPELNIAVHVKKEEGQLVVAIHSPYWMVNKTGRLLQYKADDIHRKHPKDYDMPLLFSF
KPRNFLQNNKIRLMISESELSDDFSIDTVGSYGDVKCKGEQKDYMVTFIDGSGRASIRKS
STWLRDERVNVSLSLYEETESFCSQAEMDELAPGQAVYYTWAEPTGSRILSWKCGKYKGE
LKSEEDQLLDVSKEGKFFVVSFYEGLQRVALFTTEQCVFKKICDNEKIELAEQETCISLQ
NMGVSLVNNTTSQEVAFIGITSSDVVWETKPKKRSRWKVLSVKEATMLEQRYRDYMESGP
VDSLIIDLENDYQVLFAANGVDLRIMQPFDAPLRRNFLPALKVEYSVSARQKTYRVQINR
IQIQNQLPGAIFPFVFYPIKPPKSVSMDSEPKPLADVSIITRAAGHSDILRIKYFKVLIQ
EMDLRVDLGFLYAILELFTAEHASAVTSEQEVELFEKDIEYLKTELNHSSATDTSPISLY
EYFHISPIKLHLSFSLSTGGEDGNKKERETEIIPVQSLNLLLKSIGATLTDAQDVLFKLA
FCELTYQFRTTQQLQSEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYE
PYQGAIQGPEEFIEGMALGVKALVGGAVGGLAGAASRITGAMAKGVAAMTMDEEYQQKRR
EAMNKQPSGLREGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAL
TRPTGGIIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQNI
ENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFDEFTKAPMIVEG
RRLRIEAKERVKSVFHAKEFGKIINFKTPELAKWVLAKLEDARETLPK
NT seq
8967 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtcagtggtggtcgatgtcttgaaccggtttctgggggactatgtggtg
aacctcgacagctcgcagctcagcctcggcatatggggaggtgatgccatattaagaaac
cttgagataaaagaaaatgccttgagtcaactggacattcctttcaaagtcagagcggga
cacatagtctgcactttgtgtttaattttccagacagctgatcagaattggacgccatgt
cttctggatgagaaagccaagctgtttttcaagcttgtacgtctggacaatctgtttgcg
tactggaatgtgaattcagagctctactccaaccacaaccctgatgaggctctgcgacac
ctgaagcacagtgtagccatccagagcactatccctcaagattatcatttcatctttcgt
ccaatatctgcaaacgccaagctgcgcatgaatcctcgctccgatgtggacttctcctca
ccaaaagtggatctagtggtcaacctccctgaggtggctgttgaacttagccgtccacag
tacgtgagcattctggagctgttgggatcggtggatatgatgacccggaaccttccttac
aggaaatatcgtccagatgtggcagttcacactaatgcgcatcagtggtggcgatatgtg
atcacaggcattttggaggtcaatgtaaagccccgcctttacatgtggtcttggcaacgc
atccgtcaccatcggcaacatgtgaaaaagtaccgagagatctataagaacaaaatcacc
agtaagaagcctgcagagagtctgctgaaggagcttgaggagactgaaagaaccctggat
atattcaacatcactatggcgagacagcaggctgagatggaggcctcaaaggcggggctc
aggatataccgtcctggggtgaaagtggaggaagaacagtcacagggctggttcggctgg
atgtggagctggtctggagaaagtggcacacaaaccaaagatgtcaaaacgggaggtttt
gatgagctaatgactccagcggagaaagccaaactatacgctgccattggatacagcgat
acagccgtcaatcctaacctgccaaaaaattttgaaaatatgaagatacatttccagctt
aatcgcatgtctctgtcaatcaaagagagccgagagaagccggagataatccaactgtcc
gtcattgatctgaaagccatgctgactcaaagacctgcggcccaagcaataaagatctct
gctcagctgtcatcgtttgaagtgtctggtctcccacgaggcaggtcggcccccatcctg
ctgtctccacgtcatgtggccgggatgaaagatacggctttactggacctcatgtttgag
actaacccactggacgcgagtgcagaccagagactccgcatcgagtcccaggcgctggag
atcatctatgacgctatgacagtgaacagtatgtcagctttcttcatgcctccaaaggac
ctgcagctggatgagctgaccaatgccaccctcatgaagctggagcagttcagagacaag
acctccacaggactcatgtacatcattgagactcagaaggttctggatctgaagataaac
ctcatggcttcatatgtcattgtaccagaaaatggcttttatgaccccaaacacaacctt
gccattctggatttgggtcatttccagatgtccagtcagagcagagttggcctgcctcag
ctgtctgtgggcagcagcactttagaggacatcatgtctcgagcttatgacagcttcgat
gtccaactcagcagtttacagttcctctacaccaaagcaggtggtgactggaaacgggct
cgtccgctcagacagtctgctttccacatcctggagcctgtggacctgaaggtggtcttc
agcagagccatggtggtgacggactcacgaatgcccaagtttaagatatacggtgagctt
cctcttctgtctctgcgtatctctgatgataaagtgcgtggcgtcctggcgttgctcagc
agcattccacttcctgagagtcgcccggtgccccagactagagcgccacaagctacaccc
aagtcttccaaacgagggaacacgcctcagctcacccctcgaagaccagccatagacgac
ctgcgtgcatccatcatatacggctcagatgaggagctgttctttgatgcccctagttca
ccgatcgaggatctgccgttctttgaggcttccactggctctctgcagggttcagcctct
gataagcgtctgttcatggtgctcaaagaccccaagaagaacatgaccgagttcctcttg
agatttgagatcagcaagctttccattcagctgtgccgcttgtcaggcagagaggaagtg
agcgttctgcatctgttcattgatggattagggacagaactcaaacttcgcacctttgac
atgtcttcatacaccttcctgcgtgagatctgcctcgagtgttcagagtacttggattct
gaggacaagaaagttcaccttatcaccactctggataatactgaggaagatctgctcact
ttggagtatgtcaaggcggacaaaaatgcaccagatttcaaaacgatgtataaaaataca
gagcaactaatcaaggtgaatttctcctcactggatgtgcacctgcacactgaggcgctc
ctcaactccataaatttccttaataacctcctcccaccactgaagaaagaggcacaagaa
gagcagcccgtcctacccaaggaggaagaggaagaggaagaggaggcaaaaatagaggat
tctgctgttaccaagaaatcttcctgtaagaagtcaaagtttgaggatgtggtgaatttg
cacatccgagcagacctcaactgtctgaaggtcttcataagaggagagaaagccaggatt
tctgagatcagcatagaggggctggtttctgaagttcagatgaagaagaagtgcgtagag
attctcgctaacctgaagaacattgtaattctggattgtgacaaagaggcactatataaa
aaggcagtgtccatcgcggataaggaggtgtttgatttccgcatggtgaaccatgtggat
gcaacggagggcgacgcctacacagacatgcacattgtggacaccagtgtaactttgact
gtgggctgcattcaggttattttcctcaacaagtttatgtcctcaatactggcatttatt
aataatttccaggaggctaaaaatgcattggcagaggtgacggcccaggcagcagagaaa
gcagccacaggggttttggagctggcagagagaagcacacgtatctccctggatgtagac
attaaagctcctgttgtcttcctcccacaatcctctgtttcccacaatgtcattgtggca
gatctgggtttagtgactgtaaagaaccactttgaaatggtctcctctccagcacacacc
aagatcccccctgtcatggacatcatggccgtgggactgagtgatcttaaaatgtacagg
accacattcactgatggacaatttaagagtgaacttcagttactcaaaccagtcaacatg
gacctgtcaatcaaacgcaatctctctgcctcctggtatcacagcattcctgacatccag
atcaatgcacacctcaaacccatgagcctaatcttgagccaggaggacctaactatagtg
ctgaagactctgagtgagaatctgtctgagaattctgatgctcctccagctccatccagc
cctgataagggagacacggtttctaccaaggattctcagagttctggaggaaacacggtt
gtgaccgcagcagtggtggagggcccgaaaactggcaaactaaagaacactctgaaactg
gactttaagtttgactccatgacactagtcctgtacagccccaacaacaatgagatccag
ttatcagacttccgtgatgagagtttgaagttggcagagttcatgttgggcaccatctcc
accgctgtgcacatgttctctgacagctccatgaaagcctccctcaaactcacaaactgt
ctgctggatgacaagagacagagggtgaaaatgatcacatccaggatgatggcgatgcgt
cagggtagggaaggcaatgtgatggtagacatgagttaccgacaaggccgggacggcacc
gtgctggacaccctggttcaggacctctatctgtgtgccagtatggagttcctgctcaca
gtagctgatgtctttcttaaagctatggcagatggcttctctggttccccgaaaaacaaa
caacccgccagttcgtctaaagacccagcggttcctgctgcaccagtggttgccaaaact
gagatgaacattgtggtaaagaatcctgagatcgtttttgtggccgacctcacacgcgct
gaagctccggctctagttatgacgacgcagtgtgagctggtgatgaagaacgaacccagc
ggccagtcgatgacggctgccatttcagacctgaaggtggtggcgtgtccgctcctgcga
gagaagcgtgagcacaacgtgacgacggtgcttcaaccctgtcaggtgttctttcagagc
agccaatcaccttcccagccacagtccatcgagctgtccatcagctccctcacgctcaag
gtgtctcccatcatcctaaacaccgttatcaccattcagtcagcgctgagccctgcagct
gaaacccctgaggaactggagagtcctgtgccacaggatctttgggaacgtcgcaacctg
cgagacctaaagctctggttcctggaggaggaagaagagaatgtcacccggtctgtcatt
ccactcgttcctcatggagagtctctcaaaatgaacatccacaccatctgcctgacgctg
gaggccggggtgggccatcgcactgtgcccatgctgctggccaaagcctcgttccaggga
aacgtgaaaaactggagtactctcattaacctacactgtcacctagacctggaggttaat
tattataatgagatgatgggcttatgggaaccactgttggagcctcttgataatgaggag
aaagatggcttcagaccatggactctagcaatgaagatgaagaagaagccagtatcacat
tctggagtatctgacgaggtggacggcagtgtgcctgattataaaacggtcatcagcttc
acaagtaaagaccagcttaacgtcaccctctccaagtgtggcctccacatgctcagcaat
ctaggaacggcatttgcagaggccactaagcagaccgctgaaagctttcagaaggaccag
gctccgtttgtggtgaagaatcgtttgggtttgccggtggcagtgctgcacagcgaagtg
tttagacccatcggtaaagagtctaaaaatcgtgtggtggagctccaggatggagagagt
ctgaatatggactacacccacactgctgagtccagtgaccagttctcagccatgaccagc
ctcagtgccaaaaactacatacagcccactccagttggccacactaccgcaagtgtaatc
ccactaatcaaaacaggacgggacatgcacagcgtcatgcaccgtgactctggtgtcact
cgtttctttgtctgtcagatttacactgccgagggaagcaaatatgtcaagatccgctct
cctttccagattatcaatcacttctcggtggcgttccgtgtttatgagggatctgagtgt
ctgggcatctctctgcctacagaggagttctgtgtgccgctgggctcctacagagctgaa
ctgagcctgcagcctgtaactgaaggcgaggagcagtacgaccactctgagggtttcact
tataatgaggtgaatcagaagcccggagagtgtctggagaaaacctgccatcatcaagga
gacagcgcccagatgctgaagatcaacatggttcctcttccagacactgtgatgtctcac
agccccgaggaggagtttgacaagcccatcattctgcacctgtggcccaccgttctcctc
cgcaacctcctgccgtaccccatcaccttcaagataaagggcaatggagatttcccctct
tccttactgaaagcaggccactcctcccagatccacaccgctatcatggatttctccact
ctggagctgaagctgctgggatacctgcagcaggactgggaggccaagtacagtctctgc
agcgactgtgacgagatcagcttcatcaggttcctctcgctgggagagggcgaggagacg
gagacgaggccggagctaaacatcgctgtccatgttaagaaggaggagggtcagctggtg
gtggccatccactccccgtactggatggtgaataagacaggcagactgttgcaatacaag
gcagatgatattcatcgcaaacacccgaaggattacgacatgcccctcctcttctctttc
aagccacgcaactttctgcagaacaacaagattcgcttgatgatttcagaaagtgaatta
tcagatgatttctccatcgacactgttgggagttacggtgacgtcaaatgcaaaggggaa
cagaaggattacatggtgacattcatagatgggagtggccgcgccagtatacggaaatct
tctacttggcttcgggatgagagagtgaatgtctctttatcattgtatgaagagactgaa
tccttctgctctcaggcagaaatggatgagctggctccaggtcaggcggtgtactacacc
tgggccgaaccgaccggctcaagaatactgagctggaagtgtggcaagtacaaaggagag
ctcaagagcgaagaggaccagttgttggatgtgagcaaggagggaaaattctttgttgtc
tcattttatgaaggcctccaacgtgtggcgcttttcaccaccgagcagtgtgtcttcaag
aagatttgcgataatgagaaaatagagctggctgaacaggagacctgcatctcgttacag
aacatgggcgtctcactggtcaacaacaccaccagccaggaagtggccttcattggcatc
accagttctgatgtggtgtgggaaaccaagcctaagaagcgaagccgatggaaggttttg
agtgttaaggaggctacgatgttggagcagcgctacagagattatatggagagcgggcca
gtggacagcctcatcattgacctagagaacgactaccaggtgttgtttgctgctaatggg
gtggacttgaggataatgcagccctttgatgctccgctcaggaggaacttcctgccagca
ctaaaggtggagtacagtgtctccgcccgtcagaaaacctacagagtccagatcaacagg
attcagatccaaaatcagttgcctggagccatcttcccattcgtcttctaccccatcaaa
ccgcccaaatcagtcagcatggactcagagccgaaaccgctcgctgacgtcagcatcatc
accagagcagccggacactctgacattctgcgcatcaagtattttaaagtgttgattcag
gagatggacctgcgggtagatcttgggttcctgtatgccatacttgagctcttcactgct
gagcacgccagtgctgtcacgtctgaacaggaggtggagttgtttgagaaggacattgag
tatctgaagaccgagttgaatcatagttcagctacagacacgtcccccatcagcctgtac
gaatacttccacatctctcccataaagcttcacttgagtttctctctgagcaccggtggt
gaagacgggaataagaaagagcgcgagacagagatcattcccgttcagtctctcaacctc
ctgctgaagagtattggagctacactcactgacgctcaggacgtcctcttcaaacttgcg
ttttgtgagctgacgtaccagttccgcaccactcagcagctgcagtcggaggtcatccgc
cattattccaaacaggctatcaagcagatgtatgttctggttttgggtttagatgtcctc
gggaatcctttcggactgatccgcggtctgtctgaaggcgtcgaggccttcttttatgag
ccttatcagggtgccatacagggaccagaggagtttatcgaaggcatggcactcggtgtg
aaggctctggttggaggagctgtgggcggcctggccggagcggcgtctcggatcacggga
gcgatggctaaaggtgtggccgccatgaccatggatgaggagtatcagcagaagagacgc
gaggctatgaacaagcagcccagcggactgagagaaggcctgacacgaggagggaaggga
ctcgtctctgggtttgtgagcggcatcacgggcattgtgactaaacccattaaaggagct
cagaaggaaggagcggcgggtttctttaagggtgtgggcaaaggtttggtcggagctctg
accagaccaacagggggcatcattgacatggccagcagcaccttccaaggcatcaaaaga
gctgcggagacgtctcaggatgtggagagtttacgtcctcctcgtttcatccatgaggat
ggagtcatccggccgtataaggagagagagggcataggcagccagatgctgcagaatatt
gaaaatggacggtttgccaagtacagatactttgctcatgctaaggtgaacgaatcagat
ttcctgatgatcactaaaagggggatattttttgtgactaagggcacgttcgggcagctg
acgtgtgagtggcagtatctgtttgatgagtttaccaaagcgcccatgatcgtggagggc
aggagactgcgtatagaagcaaaggaacgagtcaaatcggtgttccatgccaaagagttt
gggaagatcatcaatttcaaaactccagaactagcaaagtgggttcttgccaagcttgag
gatgccagggaaactctgccgaagtaa
DBGET
integrated database retrieval system
