Sinocyclocheilus grahami (golden-line barbel): 107563287
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Entry
107563287 CDS
T04918
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03008
Ribosome biogenesis in eukaryotes
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107563287
09123 Folding, sorting and degradation
03018 RNA degradation
107563287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107563287
03009 Ribosome biogenesis [BR:
sgh03009
]
107563287
03016 Transfer RNA biogenesis [BR:
sgh03016
]
107563287
03036 Chromosome and associated proteins [BR:
sgh03036
]
107563287
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107563287
mRNA degradation factors
5'-3' decay
5' exonucleases
107563287
Ribosome biogenesis [BR:
sgh03009
]
Eukaryotic type
Pre-60S particles
RNases
107563287
Transfer RNA biogenesis [BR:
sgh03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
107563287
Chromosome and associated proteins [BR:
sgh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107563287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
SH3_12
XRN1_D1
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
107563287
NCBI-ProteinID:
XP_016103592
LinkDB
All DBs
Position
Unknown
AA seq
1697 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKAWQGVNVYLSGHETPGEGEHK
IMEFIRSETTKPGHSPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELRNKISFEYDLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPSLGGYLNENGHLNLAHFEKYLEKLSDFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEAGAKDMKKSKSSDDSLCLAALDGVKDSHSTPGREGAGED
GEDDDMFETEFRQYKRTYYMTKMGVEVVSDEFLANQARCYVEGIQWILHYYYHGVQSWSW
YYPHHYAPFLSDVRNVSSLTLTFDLGKPFMPFEQLLGVLPSASKDLLPQCYQHLMTSPGS
PIVECYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYTHKLAPSEKARNRHTECA
INCFDKELDYAYNSPLPQLFPNIVHCHVSSSPKGQQKVKLFSIFYWLGAVTILTYCGPFN
LFLFFFLLGLKRFLLNVCCFMVICFSSLQVEDVATLVLGKSLFVNWPHLMEARVVAVSDG
ETKFSLDEPSGSQMLYLGNTPPPAKVTHLTDKEQKEWVKEVQGLSEHFSKRKGTVINETD
VVVYAQLLTGRKYVIGQNGNVHLEKQFAKQVLPYPYQTIVKDIKAFDSSLARFKTLEELF
PPGTIVFMVANPYYGAMGDVQDSSDVINEGRVRVVFSVPCEPQLDALIQNQHKYSVKYGP
GYVLASRLGITSYLVSRFSGSIFIGRGSKKNPHGEQKANVGLNLKFNKKNEEVPGYTKRT
EKEWLYSAAVEELLAEYLERFSELFDFVARNSHDDVFYEDDIWPGEDENGAEKVQEIQGW
LKNHPVSSSSRASCDLQILDAGIVEKIEEELEKSKAKKMNKKVRVTVKPHLLFRPLEQQH
GVVPDPDAEYHLFDRVVNVRESFSVPLGLRGTIIGIKGAEREAEVLYEVLFDEEFAGGLT
VRCSPGRGYRLPPSALINLSHGSRKELGCHKLTAIVKPQPSSSSHLTHKSQLGGLNHSPR
SPFIPMQQQNGRQSFNLRADTQGNTNSPHKALGQKNQHKGSSNEREFSNVWQTLQSSGMP
QKPPAHWQINAGKSSGLMPHQHQLEGKSKQSQGNDPSNKLVCVPISYTTALYKSAVKLLQ
LRVFIYLQASTEFEELIANLKISKDPVPAQNQPPTEPKDQSGEPLSPQSFAMKGTLVLKE
MLKIDSSGPSSSAPDFTGGHDSANPNAQQQSRRRSSKKLAARINTPQTDAPAAAPPPPPP
LAGQPPLLPSMATELGRVCMGLGMGPPEFAFLRNRQSLAVCQVKLSNGLLIHGPQCQSET
EAKEKAALFALQRLNSLGSFPLPPPIFPGVQQMRPLAPHPSMFGQPAGGLLMPPHGYRPL
HWGMRFPHQGQPFYGGTFPGARAPVPSAASGSHNQFVPLQVTKKRVSGRTKNQEAKQMSG
SSAYAGQTSGGGPAAASAPVPASAPKTPPPISTHEPADKPTTPKTPRQNTNPHTPGSASK
RKHRKLAVNFEAAKVTD
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcctaaattttatcgatggatatcggagcggtatccgtgtctgagtgaagtt
gtcaaagagcatcagatcccagagtttgacaacctatatttagatatgaatgggatcatc
caccagtgttcccaccccaatgatgaggacgtacacttccgtatttctgaagagaagata
tttgctgatatttttcactacctggaggtgctctttcgcatcattaagcccaggaaagtg
ttcttcatggctgtcgatggggttgcacccagggccaagatgaaccagcaacgtggaaga
agattcaggtcagcaaaagaagctgaggagaaaatcaagaaagccttggagaagggtgaa
gttttgcccacagaggccagatttgactctaactgcatcacccctggaacggatttcatg
gccaggctacaggaacagcttaaatattttgttcacaataaactgtccacagacaaagca
tggcagggagtgaatgtgtatttgtctggtcatgagacccctggtgaaggagagcacaag
atcatggagtttatccgttctgagaccaccaaaccgggtcatagcccaaacacaagacac
tgcctttatggtctggatgccgacctgataatgcttggcttgaccagccatgagcctaat
ttttctctcctcagagaggaggttcgtttcggaggcaaaaagtcacagaagaggataaca
gctcctgaggagacgacctttcacctgcttcacctctcccttatgagggaatacatcgac
tatgagttttcagagctcaggaataagatctcgttcgagtacgacctggagcggatcata
gacgactgggttctgatgggtttcctggtgggaaatgacttcatccctcatcttcctcac
ctgcacatcaatcacgatgcactgccactgctctatcgaacttacatcagcgtgctgccc
agtctggggggctacttgaatgaaaatggtcatctcaaccttgcccactttgagaagtac
cttgagaagttgtcagattttgaccgggagcacttcagcgaggtgtttgtagatctgaag
tggtttgagagtaaggtggggaacaaatacctgaacgaagcagctgggctggcagctgag
gaggctggtgccaaagacatgaagaagagtaagtcttcggacgactctctgtgtctcgcc
gctcttgatggagtcaaggactctcacagcactccagggagagaaggcgcaggggaggac
ggtgaggatgatgacatgtttgaaaccgagtttcgacagtataagcgcacctactacatg
accaagatgggcgttgaagtcgtctcggatgagtttttggccaatcaggctagatgttac
gtggaggggatccagtggatcttgcattactactaccatggagttcagtcttggagctgg
tattatccgcaccactatgcccccttcctttctgatgtgagaaacgtgtctagtctcacg
ttgacatttgatctgggcaaacccttcatgccgttcgagcagctcttgggcgtcctgcct
tcagccagcaaagaccttcttccacagtgttaccagcatctgatgacgtcaccgggctca
cccattgttgagtgttacccacaagacttcaaaacggacctgaacggcaagcagcaggag
tgggaagccgttgtgctcatcccgtttatcgacgagaaatgcttgttagctgctatggag
ccctacactcataaactagctccgtcagagaaggctaggaacagacataccgagtgtgcc
atcaactgctttgataaagagctggactatgcctacaactcccccctcccccaactcttc
cccaacatcgtccactgccatgtcagttcaagcccgaaagggcaacaaaaagtcaagtta
ttttctatattctattggttgggtgcagtgacaatattgacatattgtggtccattcaat
ttattcctttttttttttttacttggacttaaaaggtttcttttaaatgtatgttgtttt
atggtaatatgtttctcttcattgcaggtggaagatgttgcaacgctggttctcggaaag
tctttgttcgtgaactggccccatttgatggaagctcgagttgtagctgtttcagatgga
gaaacaaagttttctttagacgaaccatcaggatcacagatgttgtatctgggtaacact
ccaccgcctgctaaagtcacccatctgactgataaagagcagaaggagtgggtcaaagaa
gtgcaaggcctctcagagcactttagcaagcgcaaaggcactgtgatcaatgagacggat
gtggtggtatacgcccagctgctgacaggcaggaagtatgtcattggtcaaaacggaaat
gtccatttggaaaagcagtttgccaaacaggtcctgccctatccctaccagaccattgtg
aaggatatcaaagcctttgattcatcattggcacgcttcaagacactggaggagctgttt
cccccaggaaccattgtctttatggttgcaaacccatattacggcgcaatgggagatgtg
caagattctagtgatgtcatcaatgagggacgggttagagtggtcttctccgtaccgtgt
gaacctcaacttgatgccttaatacagaaccagcataaatactctgtgaagtacggtcct
gggtatgtgctcgcctcccgccttggtatcaccagctacctcgtctcaaggttctctggt
agcatcttcatcggaagaggatccaagaaaaatcctcatggagagcagaaagccaatgtg
ggccttaatctcaagttcaacaagaagaatgaagaagttcctggctacaccaagagaaca
gagaaagagtggctctactccgctgctgtagaggaacttttagctgaatacttagagaga
ttttcagagctgtttgactttgtcgctcgaaacagtcacgatgatgtcttttacgaagat
gacatctggccaggagaagatgagaatggcgctgaaaaggtccaggagatccagggctgg
ttgaaaaaccatccagtcagttcctcctcccgagcttcatgtgatctccagatcctggat
gctggcattgtggagaagattgaagaggagctggagaaatcgaaggcaaagaagatgaac
aagaaagtacgagtcactgtaaagccccacctgcttttcaggcctttggagcagcagcac
ggtgttgttccagatcctgacgcagagtatcatctgtttgaccgtgttgtcaatgtgaga
gaaagcttctcggttcctcttggcctccgcggaaccatcattggcatcaaaggagctgaa
cgtgaggctgaagttctgtatgaagtgctttttgatgaggagtttgctggaggactcact
gtcaggtgctctcctgggcgtggctatcgactgccccccagtgccttaatcaacctgagc
catggcagcagaaaggagctgggctgtcacaaactcactgccatcgtcaaaccccagccc
tcttcttcatcccatctcacacacaagagccagctgggcggccttaaccactcgccacgc
tcaccgtttattccaatgcagcagcagaatggcagacagagttttaatctcagggctgac
actcagggcaacacaaactcgcctcacaaagccctcggccagaaaaaccaacacaagggc
tctagtaatgagagagagttcagtaatgtatggcagactcttcagagttcaggaatgccc
cagaaaccaccagctcactggcaaattaatgctggaaaaagcagtggactgatgccacat
cagcaccagctggagggaaaaagtaaacaaagccaaggcaacgacccatccaacaaactt
gtatgtgttcctatttcatacaccactgcactgtataagtcagctgtcaaattactgcaa
ttaagagtatttatatatttacaggcatctacagaatttgaggagcttatagccaatctg
aagatctcaaaggatcctgtgcctgcccagaatcaaccacctacagagcccaaggaccaa
tcaggagagcctctttccccacagtcctttgccatgaagggcactctggtattgaaagaa
atgttgaagattgacagctctggaccaagttcctctgcccctgatttcactggtggccat
gattcagcaaaccccaatgcccaacagcagagcaggagacgctccagcaaaaaactagct
gctcggataaatactcctcagactgatgcgccagcagcggctcctcctcctcctcctcct
ctggctggccagccacccctcctccccagcatggccactgaactcgggcgggtatgcatg
gggcttgggatgggacctccagagttcgccttcctccgcaacagacagagtctcgcagtg
tgtcaggtgaagttgtctaatggcctgctgattcacggtcctcagtgtcaatctgaaact
gaagctaaagagaaagctgctctctttgcccttcaacgattgaactcgttgggttctttc
ccactgcctcctcccatattccctggagtccagcagatgaggccacttgcgcctcatccc
tccatgtttggtcagccagcaggtggtcttctgatgccgccacatggctacagacctctt
cactgggggatgcggtttccacaccagggccagccgttctatggaggaactttccctgga
gcacgggcccctgtgccatcagcggccagcggatcccacaaccagtttgttcccctacag
gtgaccaagaagcgagtttcaggcagaaccaagaaccaagaggcaaagcaaatgtcagga
agctctgcctatgctggtcagacctcaggcggtggaccggctgctgcttctgccccagtc
cccgcatcagcccccaagacccccccacccattagcacccatgagcctgcagataagccc
accacacccaagacgcccaggcagaacaccaatcctcatacgcccggctcagcctccaag
aggaaacaccggaaactggcggtcaacttcgaggctgctaaagtgacagactga
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integrated database retrieval system
