Sinocyclocheilus grahami (golden-line barbel): 107563325
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Entry
107563325 CDS
T04918
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107563325 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107563325 (xab2)
03041 Spliceosome [BR:
sgh03041
]
107563325 (xab2)
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107563325 (xab2)
Spliceosome [BR:
sgh03041
]
Complex B
Other components
Prp19-related factors
107563325 (xab2)
Complex C
107563325 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_19
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
NRDE-2
ARM_TT21
TPR_1
ATG1-like_MIT2
LTN1_E3_ligase_6th
Tcf25
Motif
Other DBs
NCBI-GeneID:
107563325
NCBI-ProteinID:
XP_016103660
UniProt:
A0A672R6T4
LinkDB
All DBs
Position
Unknown
AA seq
844 aa
AA seq
DB search
MPTLSGKSDVLFEDDDLPYEEEIIRNPYSVKCWIRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDLAYEEVNNCHERALVFMHKMPRLWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFAHNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLKVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDGDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPLKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFRWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDKCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEEQHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEVRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQDKPK
PKDKILFVRSDTSRSELAELAKQANPDEIDIDDEDEDAEDGEPDEVQLEQKSVPTAVFGG
LKDD
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgcttagcgggaagtcagacgttttattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaatccgtattcagtcaaatgctggatacgttacattgagcacaag
caaaatgctcagaaatcagtgctcaatatgatctatgaaagagcattaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagcggaggaaacaggtgaaaggcaag
tgtgtcacagatctagcatacgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgccgaggctatggatcgactactgtcagttcatggtgtctcaatgcaaa
attactcggagcagacggacgttcgatagggcgttaagagcgctacccattacccagcat
cctcgcatctggcccctgtatcttcgctttgcccataacttgcctctcccagaaacagct
attcgtgtttaccgccggtacttaaagttgtctcctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggatgaagctgcgatccggctggcagctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctctggcacgagctctgt
gacctcatttcacaaaacccggacaaggtgacctcactgaaagtgggagcgattatccga
ggaggactcactcgctttactgaccagcttggcaaactctggtgttctctggctgattac
tacatccgcagtggacactttgagaaggctcgagatgtatacgaggaagctatcctaacc
gtagtcactgtgcgagacttcacccaggtttttgacagttatgcgcagtttgaggagagc
atgatcgctgccaagatggagaccacatctgaactgggacaagatgaagatggtgacatt
gacttggagttgcgattggcccgttttgagttgctgataactcgacggccacttttactg
aacagtgtgctgctgcgtcagaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctatgagggccaacctcgacagattatcaacacatacacagaagctgtgcaaacgata
gatcctttgaaagccacaggaaaacctcactctctctgggtgtccttcgccagattctat
gaggataatgaacagctggatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagctttgcgtatactaaggaaagcaacagcaattccagcaaga
aaagcagagtattttgattcatcagaaccagtgcagaatcgagtttacaagtctctgaaa
gtgtggtccatgcttgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggattgccactcctcagatcatcattaattatgcc
atgtttcttgaagaacacaactactttgaggatagtttcaaggcatacgagcgtggcatt
gccctctttaggtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatt
gaccgttatggaggcaagaagctggagagagcgcgcgatctgtttgagcaagcgctggat
aagtgtcctgctaaatatgccaaaacaatctacttgctgtatgctaagctggaagaggag
tacggtctggcacgacatgccatggctgtgtatgagagagccactgcagctgtagaacca
gaggaacaacatcagatgttcaacatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcatgccaga
gacatgtgcctgcgctttgcggacatggagagcaaacttggggagattgacagagcgaga
gccatctattcctactgctcacagatctgtgatccaagggtgaccgctcatttctggcaa
acatggaaggagtttgaggtacgccatggtaatgaggacaccatccgcgagatgctgcgg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggctactggaacagtgtcagatcttgctcctgggcagagcggagtggatgacatg
aagctgctggagcagaaggctcaacagctcgctgcagaggctgagcaggacaaacccaaa
cctaaagacaagatcctcttcgtcaggagtgacacctctcgcagtgaacttgccgaactg
gccaaacaagctaatccagatgagattgacattgatgatgaagatgaggatgcagaggat
ggggaaccagatgaggtgcagttggagcagaagtctgtccctactgctgtcttcggagga
ctaaaggatgactga
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integrated database retrieval system
