Sinocyclocheilus grahami (golden-line barbel): 107563689
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Entry
107563689 CDS
T04918
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04137
Mitophagy - animal
sgh04140
Autophagy - animal
sgh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107563689
04137 Mitophagy - animal
107563689
04148 Efferocytosis
107563689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sgh03000
]
107563689
Transcription factors [BR:
sgh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
107563689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Cas_Csn2
Motif
Other DBs
NCBI-GeneID:
107563689
NCBI-ProteinID:
XP_016104113
UniProt:
A0A672Q1D8
LinkDB
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Position
Unknown
AA seq
770 aa
AA seq
DB search
MDTGVVTEKKRVSSERRKEKSRDAARSRRGKESEVFYELAHQLPLPHNVTSHLDKASIMR
LAISYLRMRKLLSSDDEEKENEMECQLNSFYLKALEGFLMVLSEDGDMVYLSENVSKSMG
LTQFDLTGHSIFEFSHPCDHEELREMLVHKTGSKKTKEQNTERSFFLRMKCTLTSRGRTV
NTKSATWKVLHCAGHVRVQERGEGSGDSGFKEPPLTYLVLICEPIPHPSNIEVPLDSKTF
LSRHTLDMKFSYCDERITELMGYEPDDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQATT
GQYRMLARKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSGIVEGDVVLSLQQTVTEPE
AEEKENQEMEDEASEVDILKLFKPESLKCPVESSDLYEKLKEEPEALTVLAPAAGDTIIS
LDFNNSDSDMQLLKEVPLYNDVMLPSSSEKLPISLSPLTPIDSTPVLNKLETGVEVFTFS
SASDSTNTPSTSGLCSSGPNSPMDYCFQVDSDISSEFKLDLVEKLFAIDTEAKTPFSSQA
MEDLDLEMLAPYIPMDDDFQLRIPSPLDPLPSGPHSVSAMSSLFQPLPSPASPVSSSSSV
VKQGPSSQAPSPLHLLQEVCSAPVSPFSGSRDVSPARSPAPQSSNQLNNRELSPKMLAIQ
NAQRKRKLEEVTSLCEAVGLGALLQSVNSAVEPGKRAKVLEVKGSSVLGGNKTILILPSD
VASRLLCSSSEGSSGLPQLTRYDCEVNAPVQDRHHLLQGEELLRALDQVN
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggatactggagttgtcactgaaaagaaaagggtgagctcggagcgcaggaaggagaag
tccagggatgcggcacgatctcgcaggggaaaggagtccgaggtgttctacgagttagca
caccagctccccctgccacacaatgtcacctcccacctggacaaagcctccatcatgagg
ctggccatcagctacctgcgcatgaggaagctactgagctctgatgatgaagagaaggag
aatgaaatggagtgtcagctgaacagcttttatctgaaggccctggagggtttcctcatg
gtcctgtctgaagatggagacatggtttatctctctgagaatgtcagcaagagcatgggc
ctcacacagtttgatctgactggtcacagcatctttgaattttcacacccatgtgaccat
gaggagctgagagagatgctggtccataagaccggatccaaaaagaccaaggaacaaaat
acagagcgcagcttcttcctgcgtatgaagtgcacactcactagcagagggcggactgtc
aataccaagtctgctacgtggaaggttcttcactgcgctggtcatgtccgtgtgcaggag
cgcggtgagggttcgggagactctggctttaaagagcctcctctgacctaccttgtgctc
atctgtgagcccattcctcatccctcgaatatcgaggtgcctctggacagcaagaccttt
cttagtcgccacactctggacatgaagttctcgtactgtgatgaaaggatcacagagctg
atgggatatgagccggatgatcttctgaacaggtctgtgtacgaatactatcatgccctg
gattcagatcacctcaccaagacacatcacaacttgttcgccaagggccaggccaccaca
ggccagtaccgcatgctggccaggaaaggtggttttgtgtgggtggagactcaggccacc
gttatctacaaccccaagaattctcagccgcagtgcattgtgtgcgtcaactacgttctc
agtggcattgtggagggggatgttgtcctgtccttgcagcagactgtgacagagcccgag
gccgaggagaaagagaaccaggagatggaagatgaagcctctgaggtggacatactcaaa
ctcttcaagccagaaagcctcaagtgtcccgtggagagctctgatctttatgagaagctg
aaagaggagcctgaggctcttactgtgttggcgcctgctgcaggagacaccataatttct
ctggacttcaacaactcagattctgacatgcagctgctgaaggaggtgcccctctacaat
gatgtcatgctgccctccagcagcgagaagctgcccatcagtctgtctcctctgacaccc
attgactccaccccagttctgaacaaactagagaccggagtggaggtcttcactttcagc
tctgcctcagactccacaaacacaccttccacatctggactgtgctcctctgggcccaac
agccccatggattactgtttccaagtagactcagacatcagttctgaattcaaactggac
ctggttgagaaactgtttgctattgataccgaggcaaagaccccttttagctcccaggcc
atggaggatctcgacctagagatgctggctccgtacatcccaatggatgatgacttccag
ctgcgtatcccctctccgctggatccgctcccctctggccctcactctgtgtcagccatg
agctccctgttccagcccttaccctcccctgcgtctccagtctcttcctccagcagcgta
gtgaagcaggggccatcatcacaggccccttcaccgctgcacctgctacaggaggtgtgc
agtgcccctgtctcacccttcagtggcagtcgggatgtttcccctgctcggtcccccgcc
ccacagagcagcaatcagctcaacaacagagagctgtctccaaagatgttagccatccag
aatgcccaacgtaagaggaagttggaggaagtgacatcactttgtgaggctgttggactg
ggtgctttgcttcagagtgtgaacagtgctgtagagcctggaaagagggcaaaggtttta
gaggttaaaggatcgagtgtgctcggaggaaataaaaccattctcatactgccctctgat
gtggccagtcgcctgttgtgcagttcttcagagggcagcagcgggctgcctcagctaaca
cgttatgactgcgaagtcaacgctcccgtgcaggaccgccatcatctgctgcagggagag
gagctcctgcgtgctctggaccaagtcaactga
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