Sinocyclocheilus grahami (golden-line barbel): 107565587
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Entry
107565587 CDS
T04918
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107565587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107565587
03036 Chromosome and associated proteins [BR:
sgh03036
]
107565587
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107565587
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107565587
mRNA degradation factors
5'-3' decay
Decapping complex
107565587
Chromosome and associated proteins [BR:
sgh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107565587
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
107565587
NCBI-ProteinID:
XP_016106333
UniProt:
A0A672RJ15
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MATKMENTGPAVMGLNTHNRQLLGQPKAPSQLGPQTVSAQPGKEPMVTQKPANASQERPG
IRFGDDWKKSLQLPAKDGRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
SIPIALSGRDILARAKNGTGKSGAYLIPLLERIDIKKDHIQAVVIVPTRELALQVSQISI
QISKHLGGVKVMATTGGTNLRDDIMRLDEEVHVVIATPGRILDLIKKGIAKVDKVHMMVM
DEADKLLSQDFVVIIEDIIAFLSKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELT
LKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIH
AKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPRNAETYLHRIGRS
GRFGHLGLAINLISAEDRFNLKTTEDQLMTDIKPIPGSIDKSLYVAEFHSVNPECEAEAP
QPGEESEAQ
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaagatggagaacactggcccggctgtcatgggattgaatacacacaacagg
cagcttttaggacagcctaaagccccctctcaattaggaccccaaactgtgagtgctcag
cctggaaaggagcccatggtgacccagaaaccagccaatgcatctcaggaaagacctggt
atcaggtttggtgatgactggaaaaaaagcctacagctccccgctaaggacggtagagtc
aaaacttctgatgtgactgcaaccaaagggaatgagtttgaggactactgtctaaaaaga
gagctgctgatgggcatttttgagatgggctgggaaaagccctccccgattcaggaggag
agcattcctattgccctttctgggcgcgatatactggctcgtgccaaaaacgggaccgga
aagagtggtgcatacctgatcccccttctggagagaattgacataaaaaaggatcatatc
caagccgttgtgatagttcccactcgtgaactggctctgcaggtcagtcagatcagtatt
cagatcagcaagcacctgggtggtgtcaaggtcatggcaaccacaggtgggaccaaccta
cgagatgatatcatgcgcctggatgaggaggttcatgttgttatagcaacacctggcaga
attttggacttgataaaaaagggcatagccaaggtggataaagtgcatatgatggttatg
gatgaggctgataagctgctctctcaggactttgtggttattattgaggacatcattgct
ttcctttcaaagaacagacagattctgctctattcagccacattccccatcagcgtacag
aagtttatggcaaagcacctgcagaagccctatgagattaatctgatggaggaactgacc
ctgaaaggcattactcagtactatgcttatgtcacagaaagacagaaagtccactgcctt
aacacactgttctccaggttgcagataaatcagtccattatcttttgtaactctactcag
cgagtggagcttttggccaagaagatcacgcagctgggctactcctgcttctacattcat
gcgaagatgatgcaggaatacagaaaccgtgtttttcacgacttcagaaacgggctctgc
aggaaccttgtttgcacagatttattcactagaggcatcgatatccaggcagtaaatgtg
gtcatcaactttgactttcccaggaatgcagaaacatacctgcatcgcatcggacgctca
ggcaggtttggacatctgggtttggcaatcaatctcatttccgctgaggatcgctttaac
ctgaagaccactgaggaccagctgatgacggacataaagcccattcctggcagcattgat
aagagcctgtatgtggcagagtttcactctgtgaaccctgaatgtgaggcagaggcacct
cagcccggcgaagagtctgaagctcagtag
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integrated database retrieval system
