Sinocyclocheilus grahami (golden-line barbel): 107568984
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Entry
107568984 CDS
T04918
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107568984 (tnr)
04518 Integrin signaling
107568984 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107568984 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107568984 (tnr)
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107568984 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
EGF_Tenascin
EGF_2
FN3_Tor_3rd
Fn3_Dep-1_2nd
Fn3_Dep-1_4th
Interfer-bind
DUF4998
DUF7949
GH101_dom-5
Motif
Other DBs
NCBI-GeneID:
107568984
NCBI-ProteinID:
XP_016110469
UniProt:
A0A672KML8
LinkDB
All DBs
Position
Unknown
AA seq
1350 aa
AA seq
DB search
MWGCTMAIQGSIVSLALLFFGIQAVPNPTSKLVRTTRVRRQVSEGGGPSSNQTQAMIFNH
VYNINVPLESLCSVDLDTVPGPGTNKGAAGSDKMPTEYTEETVDSDSQVTFTHRINIPKQ
ACACPAAAAMEQLANRVEMLEREVSLLRAQCSSSCCGESSVMGRLDFVPQCGHGTFSMEV
CGCVCEEGWIGKNCSEPRCPDDCSGQGICIEGECVCDRNFGGENCSEPRCPGDCSDRGLC
IDGECVCEEAFAGEDCSLGRCLNDCSDQGTCVNGTCQCRPGFLGEDCSLIFCANNCSQKG
VCKDGFCACQEGYTGDDCASVSPPMNLRVRGVSENTIDLEWEGPVILTDYLITYAPTTPG
GVQLEIRVPGNVTNTTIKGLGPGLEYNINVYAVIDNIISAPMNTLVSTYLSNPDGLLFKS
IMETSVEVQWQPLDYLFDGWEISFIPKDNDGGMTAQLPSTITSFHQTGLRPGEEYTVNLV
ALKDQGRSQPVTATVITLIDGPAQLIVRDISDTVAFVEWSPPKAKVDQIILRYGLVGVDG
PKTTFRLQPTLSQYSLQVLRPGSTYEVSVSGVWNGTESGAIFTKFTTEIDAPKNLRVLSK
TSTSLELEWDNSEADVEGYRVVYSTLAGDQYDKVIVPSNDGATTKTTLTDLLPGTEYGIG
ISAVLGANQSTPATMNARTGLDVPLDLTVTASTDNTITLLWGTVQGPIDHYKVTYTSSTG
VTTELMVPKDVNTTTLTGLEPGTEYTITVTAQRGRQQSTAATIDAFTGFRPITQLFFSDV
TSDSLTVAWSAPAPPADAFILNYNAQDSSDDSEIALDGSKTRITLTGLLPSRRYTVTLVT
MHGNVTSKPVIGSVATGLDPPRDMSVMYVTEESVTISWIQPLAPFDYYKMSYQSPKGRMD
NVVTDNDITNYTLTSLHPATEYEIKLNAVRGSQESKVITTTVFTAMDMPMELTALNVTPQ
GALLRWNPPVSSVDNYVLTLTQNQVTADTFLVEGNKQEHQLSQLIPSTTYSVALYASKGP
LTSGTVIANFVTPMDAPQNLTASEINHRSALISWQPPIADIDNYMLTYKAADGSRKELIL
DAEDTWIRLEGLAETTEYTVRLQAARGLETSAIVSTSFTTGNRLFPTPQNCAQHLLNGET
LSGIYTIYINRDLSQGVQVYCDMTTDGGGWIVFQRRQNGLTDFSRKWSDYKIGFGNLEDE
FWLGLDNIQKIAAQGRYELRIDMKDSQESVYANYDRFSIGDSKSLYKLRIGEYNGTAGDS
LSYHQSRPFSTKDKDNDIAVTNCALSYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWK
GHEFSIPFVEMKMRPFNYRSISGKRRRSTH
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtggggatgcaccatggcaatacaaggttcaatagtgagcctggctctactgttcttt
gggattcaagctgttcctaaccccaccagcaaactagtgaggaccacaagagtgaggcga
caggtttccgaaggcgggggtccctctagcaaccagacccaggccatgatcttcaatcat
gtatacaacatcaatgtacctttagagtcactctgttcagtggacctagacacggtacca
gggccagggacaaacaaaggtgcagctgggagtgacaagatgccgacagagtacacagaa
gagacagtggactcggacagccaggtgaccttcacccatcgcatcaatatcccaaaacag
gcctgtgcttgtcctgcggctgccgccatggaacagctggctaaccgcgtagagatgctg
gagagggaggtgtccttgcttcgagcacagtgtagctccagctgctgcggagagagctct
gttatgggtcgcttggacttcgtccctcagtgtggccatggcacgttcagtatggaggtt
tgtgggtgtgtttgtgaagaaggatggattggcaagaactgctctgaaccccgctgccca
gatgactgctccggccagggcatttgcatcgaaggcgagtgtgtatgcgaccgtaacttt
ggcggtgagaactgctcggagcctcgatgtccaggtgattgctctgacagggggttgtgc
attgatggcgagtgtgtttgtgaggaagcctttgctggagaggactgctcgctgggcaga
tgtctgaacgactgctcagatcaaggaacctgtgtgaacggaacctgccagtgccgacct
ggcttcctgggggaagactgctctctcatcttctgtgctaataactgcagccagaaaggg
gtgtgtaaggatggtttctgtgcctgtcaagagggatatacaggggatgactgcgcttca
gtgtcacctcctatgaatctgcgagttcgaggagtgtcagagaacaccattgatctggaa
tgggagggacctgtgatcctgacagactatctcatcacttacgcccccacaacccccggt
ggagtccaactagagatcagagtcccaggaaatgttacaaacaccaccatcaaaggcttg
gggccgggtctggagtacaacatcaatgtgtacgcggtgatcgacaacatcataagtgcc
ccaatgaacaccttagtctccacctatctctcaaatccagacggtttactcttcaaatcc
atcatggagacatccgtggaggttcagtggcaacccttagactacttgtttgatggttgg
gaaataagcttcattcccaaggacaatgatggagggatgacagcacaactacccagtacc
atcacgtcattccaccaaacagggctgcggcctggggaagaatacactgtcaacctggtg
gccttgaaagaccagggaaggagccagcctgttactgcaaccgttatcacactgatagat
ggaccagcacagcttattgtacgagacatctcagacacggttgcctttgtggaatggagc
ccacccaaggctaaagttgaccagattatattgcgatatgggctggtaggggtggacgga
ccaaagaccacctttcgcctgcagcctactctgagccagtactccctccaagtcctgagg
cctggatccacgtatgaagtatcagtcagtggagtctggaatggcactgagagtggagcc
attttcacaaagtttaccacagaaatcgatgcaccaaagaacctgagagtgctgtcgaaa
acttccactagcctggagctggaatgggacaatagtgaggcagatgtagaaggctacagg
gtggtttacagcacactggctggtgatcagtatgacaaagtcattgtcccaagcaacgat
ggtgccaccaccaaaactactctcactgatttactgcctggcacagagtatggcatagga
atttcagccgttctaggtgccaaccaaagcaccccagcaacgatgaatgctagaacaggt
ctggatgtccccttggatttgactgtcacagcctccacagacaacaccatcaccctgttg
tggggcacagtgcaggggcctattgatcactataaggtgacctacacctcctccactgga
gtcacaactgagctgatggtgcccaaggatgtcaacaccaccacactgacaggtctagag
ccgggcaccgagtacaccattacagttacagcacagagaggcaggcagcagagcactgcc
gctactattgatgccttcacagggttccgccctatcacacagctcttcttctccgatgtc
acttctgattcattgactgtggcatggagtgcaccggcaccgcctgctgacgcattcatc
ttgaactacaatgctcaggactccagtgatgattctgagattgctctagatgggtccaaa
accagaatcacactcactggtctcctgccctccaggcggtacactgttaccctggttacc
atgcatggcaatgtgacctcaaagccagttataggctcagtcgcaacaggattggaccct
cccagagatatgagtgtgatgtacgtcacagaggaatctgtaaccatatcatggattcaa
ccactcgcaccctttgattactataaaatgtcttaccagtcaccaaaaggtaggatggac
aatgtggtgactgacaatgacatcaccaactacaccctaaccagcctccatccagcaacg
gagtacgagatcaagctgaacgcagtgagaggaagccaagagagcaaggtcatcaccact
actgtctttacagctatggacatgcctatggagctcactgcattgaatgttacacctcag
ggggctctgctgcgttggaacccccctgtttccagtgttgataactacgtgctcaccctc
acccagaaccaagttacggcagacaccttcttagtggagggtaacaagcaggagcaccag
ctgagtcagctcatccccagcaccacctactcagtggctctttatgcctctaaaggtcct
ctcaccagtggcacagtcattgccaactttgtcacacccatggatgcgccccagaacctg
acagctagtgagattaaccatcgaagcgccctcatatcctggcagccgcccatcgcagac
atcgataactacatgctgacctacaaagcagcagacggcagtcgaaaggagctgatctta
gatgccgaagacacatggatccgtctcgaggggctggcggagaccaccgaatacactgtg
agactgcaagccgccagaggattagagaccagcgccattgtttctacatctttcacaaca
ggaaaccgattgtttcccacgccacagaactgtgcgcaacacctcctgaacggagagacg
ctgagtggaatctacaccatctacatcaacagagacctcagccaaggtgtgcaggtttac
tgcgacatgaccaccgacggaggcggctggatagtgttccagcgacgtcagaacggtttg
actgatttctccaggaagtggagtgactacaagatcggctttggcaacctggaggatgaa
ttctggctcggcttggacaacattcagaagattgcagctcaaggtcgttatgagctccgc
attgacatgaaagacagccaggagtctgtatatgccaactatgacaggttttccattgga
gattccaagagcctctacaaactgcggataggagagtataatggcaccgcaggtgactct
ctaagctaccaccagagcagacctttctctaccaaggacaaggacaatgatatcgctgtc
actaactgtgcactgtcctacaaaggagcctggtggtacaaaaactgtcatcgggccaac
cttaacggcaaatacggagagtccagacatagtcagggtataaactggtatcactggaaa
ggccatgagttttccatcccttttgtggagatgaagatgagacctttcaactatcgcagc
atcagtggcaagcggaggaggtccacccattaa
DBGET
integrated database retrieval system
