Sinocyclocheilus grahami (golden-line barbel): 107570126
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Entry
107570126 CDS
T04918
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107570126
04518 Integrin signaling
107570126
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107570126
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107570126
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107570126
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
107570126
NCBI-ProteinID:
XP_016111809
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MMLSADSRTLLLFLATLVALLAVVKCQEEDDQDPGSCTQDGQFYRDKDVWKPEPCRICVC
DTGAVLCDEIICEELKDCPKPEIPFGECCPVCAADQPSSPGLPGAKGQKGEPGDITDVVG
PRGSAGPMGPPGEQGPRGDRGEQGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFASQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPNGAPGPQGFQGSPGEAGESGSSG
PLGPRGPPGPSGKPGDDGEAGKAGKAGERGPLGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGESGATGAKGESGSPGESGAPGPMGPRGLPGERGRPGSSGAAGARGNDGSPGAAGPPG
PVGTAGSPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGVPGSSGPSGLSGNPGTDGLPG
AKGSVGAPGIAGASGFPGPRGPPGPQGATGPLGPKGQSGDLGLAGFKGEAGPKGEIGNAG
PQGALGPAGEEGKRGPRGEPGALGPLGPSGERGTPGNRGFPGQDGLAGPKGAPGERGAAG
VSGPKGASGDPGRPGEPGLPGARGLTGRQGDAGPQGKVGPSGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGGNGEAGKSGEKGLAGAHGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGVGPQGLQG
PRGLSGTPGTDGPKGAVGPGGAPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGEKGPEG
APGKDGARGLTGPIGPPGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPFGPAGFAG
PPGADGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPSGATG
FPGAAGRVGPPGPNGNLGPAGAAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGTPGEKG
DPGEDGPHGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGSGDRG
PPGPVGAPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPVGAPGAPGGTGAPG
PVGPTGKQGDRGEAGPKGPAGALGPAGSRGMPGPQGPRGDKGEAGDSGERGQKGHRGFTG
LQGLPGPPGQAGDQGASGPAGPGGARGPPGPVGPAGKDGANGMPGPIGPPGPRGRSGETG
PSGPPGNPGPPGLPGPAGPGIDLSAFAGLSHPEKGPDPLRYMRADQAAEGNVQHDAEVDA
TLKSLNNQMENIRSPDGTKKSPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAMKVFCNM
ETGETCVYPKPANIPRKSWWTSKGAERKHVWFGEAMNGGFHFGYGDDNLAPNTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDEATGDLKRALLLQGSNDVEIRAEGNSRFTYTVLEDG
CKKHTGQWSKTVLEYKSQKTSRLPIVDIAPMDIGGAHQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtcggcggattctaggactttactgctgtttctggcaacactagtcgcgctt
ttggccgttgtcaaatgccaagaggaggatgaccaagatccaggcagctgcacgcaggac
ggacagttctatagggacaaggacgtgtggaaaccagagccgtgtcgcatctgtgtttgt
gacaccggcgcggtcctgtgcgacgaaatcatctgcgaggagctgaaagactgtcccaaa
cccgagatcccgtttggggagtgctgtccagtctgtgctgctgaccaaccttcctcccct
ggcttgccaggtgctaagggacaaaagggggaaccaggagacataacagatgttgtggga
ccgaggggatcagccggtcctatgggacccccaggagaacaagggccccgaggagacaga
ggagagcagggggagaagggaagtccagggccccgtggcagagatggtgagccggggacc
cctggaaaccccgggcctcctggaccgccggggccaaacggacctccaggcctcggtggg
aactttgcttctcagatggctggtggatttgatgacaaagctggaggagcacagatggga
gtgatgcaaggaccaatgggtccgatgggtcctcgaggaccaccaggccccaatggagct
cctggcccacaaggatttcaaggcagccctggagaagccggagaatccggatcatctggc
ccattgggtcctcgtggccccccgggtccctcaggaaaaccaggagatgatggggaagca
ggcaaagctgggaaagctggtgaacgtggacctctcgggcctcagggagctcgtggattc
ccaggaacaccaggtctacctggaatcaagggacacagaggttattcaggtcttgatgga
gctaaaggagagtccggagccactggggctaaaggtgagtccgggtctcctggagaaagc
ggtgctcctggaccaatgggcccacgaggtttgcctggtgaacgggggcgtccaggatca
tccggagctgctggtgctcgtgggaatgatggttcacccggcgctgctggtcctcctggt
ccagtcggtacggctggctctcccggtttcccaggatcccccggtgctaagggcgaagca
ggacctaccggagccagaggacctgagggagcacaaggaccccgcggagagtctggcgtc
cccggatcttcaggaccttctggactctctggtaaccccgggactgatggcctccccgga
gccaaaggatcagtgggtgctcctggtatcgctggcgcttctggtttccctggccctcgg
ggccctcctggccctcagggagcgactggacctctggggcccaagggacagtctggtgat
ctgggtctcgcagggttcaagggtgaggccggtcctaaaggagaaatcggtaacgctggg
cctcaaggtgcccttggccctgctggagaggaaggtaagcgaggacccagaggagagcct
ggtgctcttggacccctcgggccgtctggagagagaggaactcctggtaatcgaggtttt
cctggacaagatggtctggctggtccaaagggtgctccgggcgagcggggagctgcgggg
gtgtcggggcccaagggggccagcggagatccgggccggcctggagaaccgggtctgcct
ggtgcacggggtctgacgggacgccagggcgatgctggtccacagggcaaagttggtccg
tctggtgctgctggtgaagacggtcggcccggacccccgggccctcagggtgctcgcggt
cagccgggagtcatgggcttccctggacccaagggtggcaatggtgaggctgggaagtct
ggagagaagggactcgctggagctcatggcttgcgtggtctgccggggaaagacggagag
acgggcgctgccggaccccctggacctgctggtcctgcaggagagagaggagagcagggt
cagcccggaccctccggcttccagggtctgcctggacccccgggcccccctggtgaaggt
ggtaaacctggcgatcagggtgttccaggagaggctggggccgcaggggccaccggacca
cgcggtgagcggggtttcccaggagagagaggaggtgtggggccccagggcctccagggg
cctcgaggtctttcaggaactccaggaactgatggccccaagggtgccgtcggcccgggg
ggagctcctggtgctcaggggcctccaggactgcaggggatgcctggagagagagggaca
tctggcattcctggaccaaagggggacagaggtgacaacggtgagaaaggacctgaagga
gctcctgggaaggacggcgcaagaggtttaacgggtccaatcggtccccctggtcctgcg
ggacccaacggtgaaaagggagaatctggacctgcaggaccgtctggagctgctggtact
cgcggtgttcctggtgacagaggagagactggtccttttggtcctgctggttttgctggt
cctcctggtgcagatggacagcctggcgttaagggagagcagggtgaaggtggacagaag
ggtgatgctggtgcaccgggcccccagggtccttctggagctccaggtcctcagggacca
actggtgtgtctggaccaaaaggggctcgcggtgctcaaggaccttctggtgccacaggt
ttcccaggagctgctggtagagttggacctcctggtcccaatggtaacctgggtccggct
ggtgctgctggtcctcctggtaaagacggtccgaagggtgtgcgtggtgacggtggtcct
cctggaagacccggggacgctggcttgcgtgggccggctgggactcctggagagaaggga
gatcctggagaagatgggcctcacggtccggatgggcctgcaggtcctcagggtctggct
ggtcagcgtggtattgttggacttccaggacagcgtggtgaaagaggtttccccggcctg
cctggaccctctggtgagcctggtaaacaaggagctgctgggggatctggagaccgtgga
ccccctggacccgtgggagcgcctggtctgaccggacctgctggggaacctgggagagag
ggcaatcccggatctgatggtcctcctggccgagacggttctgcaggaataaagggtgac
cgaggagacactggacccgtgggcgctcctggtgctccgggtggcactggtgctcccggt
ccggtcggacccaccggcaaacagggagaccgaggagaggccggacccaaaggacctgct
ggggctctggggcctgctggatctcggggaatgcctggcccacaaggcccgcgcggagat
aagggtgaggctggcgattcgggtgagagaggacagaaaggacaccgaggtttcactggt
cttcaggggctgcctgggcctcctggccaagctggtgaccaaggagcttctggacctgct
ggacccggcggagcaagaggacccccaggccccgttggtccagctggaaaagatggagca
aatggtatgcctggacccatcggaccccctggacctcgtggtcgttctggagagactggg
ccatccggccccccaggaaaccctggtccccccggtctccctggccccgcggggcccggc
atcgacctgtctgctttcgctggtctgtctcatcctgagaagggtccggaccccctgcgg
tacatgagggcagaccaggccgccgaaggtaacgttcagcatgatgcagaggtggacgcc
actctgaagtccctcaacaaccagatggagaacatccgcagtcctgatggtactaaaaag
agcccggcccgcacctgcagggacctgaagctctgccaccccgactggaagagcggtgaa
tactggattgatcctaaccagggctgcaccgttgatgctatgaaggtcttctgcaacatg
gagaccggcgagacctgcgtttatcctaaacccgccaacatcccacgcaagagctggtgg
acttccaagggtgcggagcgcaaacacgtttggtttggagaagccatgaatggtggattc
cattttggctatggagatgacaacctggcacctaacacagcaagcattcagatgactttc
ctgagactgctgtccacagaggcctcgcagaacctcacctaccactgcaagaacagcgtg
gcctacatggatgaggccactggagacctgaagagagctctgctgctgcaggggtccaat
gatgtggagatccgagccgagggcaacagccgcttcacatatactgttctggaggacggc
tgcaagaaacacacaggacaatggagcaagacggtcctcgagtacaaatctcagaagacg
tcacgcctgcccattgtggacattgcaccgatggatattggaggagctcatcaggagttc
ggagtggacgtgggtgccgtctgtttcttgtaa
DBGET
integrated database retrieval system
