Sinocyclocheilus grahami (golden-line barbel): 107571110
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Entry
107571110 CDS
T04918
Name
(RefSeq) superkiller viralicidic activity 2-like 2 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107571110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107571110
03041 Spliceosome [BR:
sgh03041
]
107571110
03009 Ribosome biogenesis [BR:
sgh03009
]
107571110
03016 Transfer RNA biogenesis [BR:
sgh03016
]
107571110
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107571110
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107571110
Spliceosome [BR:
sgh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107571110
Complex C
U4/U6.U5 tri-SnRNP related factors
107571110
Ribosome biogenesis [BR:
sgh03009
]
Eukaryotic type
Pre-60S particles
Helicases
107571110
Transfer RNA biogenesis [BR:
sgh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107571110
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Stealth_CR1
Motif
Other DBs
NCBI-GeneID:
107571110
NCBI-ProteinID:
XP_016112870
UniProt:
A0A672JYI8
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKDTPKSAAQAGSKSPDNAGEQQGDSAAVRKRDADTDGP
DEVVLGKRPKLETVSAEEINLSELMPKVKAEQVETVEGCTHEVVLPADEEYTPLKPRVGK
AAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDY
RPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDVGDTGGNVGGKWDPKGRKG
GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFNN
ATDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMK
KLEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVRVKKED
LDFGWGLVVNFHKKTNVKAGGGDADPLFVVEVLLHCSKDSVKNAATEAAKPAGPGEKGEM
QVVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFLDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGDIKAAKRELKKARTVL
QMDELKCRKRVIRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQAT
ALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDTYLNQFRPHL
MDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFATG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggagacgatttgttcagcgtgtttgatgaagaacaggccggttct
agcaaaaaagacactccgaagtcggccgctcaggcaggcagtaagagtcctgataacgcg
ggggaacagcagggagattcagctgctgtgcgcaaaagagatgctgacactgatggtcca
gatgaggtggtgcttgggaagagaccgaagctggaaactgtgtcagctgaggagatcaat
ctgtcagagctcatgcctaaagtcaaggcggagcaggtggagacagtggagggctgcact
catgaggtggttcttcctgcagacgaggaatacactccactgaaaccacgcgttggaaaa
gcagctaaggagtaccccttcatacttgaccctttccagcgtgaggccatcctgtgcatc
gataacaaccagtctgtgcttgtgtcagcccacacatcggcagggaagacagtgtgtgcg
gagtatgccattgctctggctctccgagaaaagcagcgagtgatcttcaccagccccatc
aaagctctgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctg
atgaccggtgacgtcaccattaaccccacggcttcttgcctggttatgaccaccgagatt
ttgaggagcatgctgtacagagggtcagaggttatgagggaggtggcatgggtcatcttt
gatgagatccattacatgagagactcagagcgtggagtggtctgggaggaaaccatcatc
ctactgccagacaacgtgcatcatgtcttcctgtcagccaccattcccaacgctcgacag
tttgctgagtggatttgtcacctccacaaacagccctgccacgtggtgtacacagattac
cggcccactccactgcagcactacatctttccagcagggggcgatggactccatctggtt
gtggatgagaacggagagttcagagaagacaattttaacaccgcaatgcaggtcctgagg
gacgtgggggacacgggaggcaatgttgggggcaaatgggaccccaaaggcagaaagggt
ggaaccaaaggtccatctaatgtctttaagattgtgaagatgatcatggaaaggaacttc
cagccggtgatcatctttagcttcagtaagaaagaatgtgaggcttacgcactgcaggtg
gccaaactggatttcaacacagatgacgagaagaaactggtggaagaagtgttcaacaac
gctacagactgcctgtctgatgaagacaaaaagctgccacaggtggagcatgttctgccg
ctgctgaagagaggaattggaattcatcatggcggcctcctcccgatcctgaaagagacc
attgagatcctgttctctgaggggctgctaaaggccttgtttgctacagaaacatttgcc
atgggaatcaatatgcctgcaagaaccgttctcttcaccagtgcacgtaaatttgacggc
aaagacttccgctggatcacctctggagagtatatccagatgtcaggacgtgccggcaga
agaggaatggatgagagaggaatagtcattttcatggtggatgagaagatgagccctgcg
gtgggcaaacagttactgaagggttcggctgatcctctgaacagtgcgttccacctgacc
tacaacatggtgctcaatctactgcgtgtggaggagatcaacccagagtacatgctggag
aaatccttctaccagttccagcactatagagctgtgcctggtgttgtggagaagatgaaa
aagctggaggaggagtataatgcaatacgaatccctaacgaagagagtgtggtgacctac
tacaagatccgtcagcagctggccaaactaggcaaagaaatcgaggagtttattcacaaa
cctagatattgcctgcccttcctgcagccaggcagactggtcagggtgaaaaaagaagat
ctggattttggctggggtttagtcgtcaatttccacaagaagacaaatgtcaaggctgga
ggtggtgatgccgacccgttgtttgtggtggaggttctgcttcactgcagcaaagacagc
gtgaaaaacgcggccacagaggcagccaaaccagcaggcccaggagaaaagggcgagatg
caggttgttcctgttattctacatctcatcacctccattagctctgtgcgcctctacatc
cccaaagacctgcggccgtatgacaaccgacagagcatgctcaaatccatacaggaggtg
cagaaacgtttcctagatggcgttcctctgctagatcccatagacgatatgggtatcaag
gatccagcgctgaagaaggtcattcagaaggtggaggcgttcgagcacaggatgtacacg
caccccctgcacagcgaccccaatctggaggccgtttacactctgtgtgagaagaaagca
ctgattgcaggcgacattaaagcggcgaagcgcgagctaaaaaaagcacgtaccgtgctg
cagatggacgagctgaagtgcaggaagcgtgtgatacggcgcctgggattcgccacttcc
tctgatgtcatcgagatgaaaggccgtgtggcctgtgagatcagcagtgcagatgagctg
ctgctgacagagatggtgtttaacgggctgttcaacgacctgacggcggagcaggccacc
gcgctcctcagctgctttgtcttccaggaaaacgctaacgagatgcccaaactgacggag
cagctggccggaccgctgcgacagatgcaggaatgtgccaagcgtattgctaaggtgtct
gcagaggccaagctggacgtggatgaggacacttacctgaaccagttccgcccgcacctg
atggatgtggtctacacctgggccaacggctcctcattttctcagatatgcaaaatgaca
gatgtttttgaaggcagtattatccgctgcatgcgcagattggaggagctcttgaggcag
atgtgccaggcagccaaggccattggaaacacagagctggagaataagtttgccacgggc
ataacgaagattaagagggatatcgtgtttgctgccagtctttacctgtga
DBGET
integrated database retrieval system
