Sinocyclocheilus grahami (golden-line barbel): 107571757
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Entry
107571757 CDS
T04918
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04518
Integrin signaling
sgh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107571757
04518 Integrin signaling
107571757
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107571757
09142 Cell motility
04820 Cytoskeleton in muscle cells
107571757
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107571757
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107571757
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
107571757
NCBI-ProteinID:
XP_016113605
LinkDB
All DBs
Position
Unknown
AA seq
1381 aa
AA seq
DB search
MNTDSDWERRQRGMERRWLASTQKQDLAVFREFLSCKGPVGPSGDPGSPGSPGRDGIPGE
NGLPGPPGSPGTPGFGGGSFLSQMAYGSEKSSGQALPGPPGPMGARGLPGSAGSPGPQGF
TGPAGEPGEPGAPGPMGSRGSAGPPGKNGEDGEAGKAGRPGERGAAGPQGARGFPGTPGL
PGIKGHRGFSGLDGAKGDTGPAGPKGEPGVHGESGAAGVMGARGLPGERGRSGPPGPAGA
RGNDGNTGGAGPPGPTGPAGSPGFSGGAGAKGETGPSGGRGSEGPQGARGEPGNPGPAGA
AGPAGAPGADGGAGGKGSPGAAGIAGAPGFPGSRGPAGPPGPSGGPGPKGNNGDPGLQGT
KGDAGPKGEAGPLGPQGLAGPSGEEGKRGARGEPGGSGPVGPLGGRGAPGNRGLPGSDGA
PGPGGGPGERGANGPMGSQGATGESGRPGEPGLPGSKGMTGAPGSPGPDGKAGPSGSSGQ
DGRPGPPGPAGSRGAPGVMGFPGPKGADGEAGKLGERGVVGPPGALGAPGKDGDFGAPGA
PGPAGPSGEKGEQGPAGSPGFQGLPGTQGATGESGKPGDQGALGESGPSGPSGPRGDRGF
PGERGSNGPAGPTGARGAPGPSGNDGSKGEPGAAGSPGGVGPSGMQGMPGERGAGGMPGA
RGDRGDAGPKGPDGALGKDGLRGMTGPIGSSGPSGVAGEKGESGAIGPPGVTGSRGSPGE
RGELGPPGPAGFAGPPGANGQPGAKGQSGDSGPKGDAGAPGGAGPVGGAGPQGPAGATGS
KGARGGAGSPGATGFPGAAGRVGPPGPSGVSGPPGPTGVAGKEGQRGARGERGATGRPGE
AGASGPPGPSGEKGSLGPDGPAGPSGSPGPPGVIGSRGIVGLSGQRGERGFGGLPGPSGE
PGKQGPSGSLGERGPPGPMGPPGLGGAPGEAGREGNTGHDGAPGRDGPPGPKGDRGESGN
SGPHGAPGAPGAPGPIGPSGKTGDRGEAGPAGSAGTSGPAGARGGQGPAGSRGDKGESGE
AGERGMKGHRGFSGMTGVPGPPGAPGDQGPAGPSGPAGPRGSSGSNGMAGKEGMNGLPGP
VGPPGPRGRSGEMGTAGSPGLPGPPGPPGPAGIGEPFLPMPQVEKGPDPMRGGYRADDAS
VRDRDTEVDTSLKSLSQKIENMRSPEGTQANPARMCRDLRMSHPDWKSSSYWVDPNQGSP
LDAIKVFCNMETGETCVSPSQNTIPMKNWYTSKNIREKKHVWFGESMPNGFQFQYGSEGS
DPDDVNIQLTFMRLMSNEASQNITYHCKNSIAYMDQTTGNLKKAVLLQGSNDIEIRAEGN
SRFTYRVSEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDIGAPDQEFGVEVGPVCF
L
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagacagcgactgggaacggagacagagaggaatggagaggcgctggctcgca
tcaacacagaaacaggacttggccgtgttcagggaatttctctcttgtaagggtcctgtt
ggtccatctggagatccaggttctccagggtctcctggcagagatggtattcctggagag
aacggactcccgggaccccctggttctcctggaactcctggcttcggcggcggatctttc
ctttcccagatggcttacggcagtgagaaatccagcggccaggctctccccggaccccca
ggccccatgggtgctcgtggcctccctggatctgcaggttcacctggccctcagggattc
actggacccgcaggcgagcctggagagcctggtgctcctggcccgatgggttctcggggt
tctgctggtcctcctggaaagaatggagaagatggtgaagctggcaaagccggccgtcct
ggagagcgcggagccgccgggccccagggtgctcgtggattcccaggaacccctggactc
cccggcatcaagggacacagaggtttctctggtctagatggagctaagggagacactgga
cctgctggacctaagggagagcctggagttcatggtgagagcggtgctgctggagtcatg
ggtgctcgtggtttgcccggtgagagaggtcggtctggtcctcccggccctgctggtgca
cgcggtaatgatggaaacactggcggcgctggacctcccggacccactggccctgctggt
tctcctgggttctctggtggtgctggtgctaagggagaaaccggcccttctggaggtcgt
ggttcagagggaccccaaggggcccgtggagagccgggtaaccctggacctgctggtgct
gctggtcctgctggagctcctggtgctgatggtggtgctggtggcaaaggatctcctggt
gctgctggtattgctggtgctcctggtttcccaggatcccgtggacctgctggaccccct
ggcccttctggtggtcccggccccaagggaaacaatggtgatccaggactccaaggcact
aagggagatgccggtcctaagggagaagctggcccacttggaccccagggtctggctgga
ccttctggtgaagaaggaaagcgaggagctcgtggagagccaggcggctctggacctgtc
ggacccctcggaggccgtggtgcccctggcaatcgtggtcttcctggaagtgatggagct
cctggacccggggggggccctggagagcgaggagccaatggaccgatgggatctcaagga
gccaccggagagtctggtcgcccaggagagccaggattgcctggatccaagggaatgact
ggtgcccctggaagccctggacctgatggcaaagctggaccctctggttcatctggacaa
gacggccgacctggaccccctggacctgctggatctcgtggtgctcctggtgtgatgggc
ttccctggtccaaagggagctgatggtgaggctggtaagcttggtgagagaggagtcgtt
ggacctcctggtgctttgggcgctcctggcaaggatggagattttggtgctcctggtgct
cctggacctgctggcccatctggagagaaaggagagcagggacctgccggttctcctgga
ttccagggtctgccaggtacacagggtgccaccggagagtcgggcaaacctggtgatcag
ggtgctcttggtgaaagcggtccttctggtccttctggtccaagaggtgacagaggtttc
cccggagagcgtggaagtaatggacctgctggccccaccggtgctcgtggggcccctggt
ccttctggtaatgatggttctaagggagagcccggagccgctgggagccctggtggtgtg
gggcccagtggaatgcagggaatgcctggagagcgcggcgccggaggcatgcctggagcc
agaggagacagaggtgatgctggacccaagggccctgatggagcgctcggtaaggatggc
ctgcgtggaatgaccggccctattggatcttctggaccttctggtgttgctggtgagaag
ggagagtctggtgctattggacctccaggagtgactggttctcgtggatccccgggagag
cgcggagagctcggtcctcctggacctgctggttttgctggacctcctggtgccaacgga
cagccgggtgctaagggacagagcggtgactctggacccaagggtgatgctggggctcct
ggaggcgctggccccgtcggaggcgctggtccacagggacctgctggtgctactggatct
aagggtgctcgtggtggtgctggatctcctggtgctactggtttccctggtgctgccggt
cgagtcggacctccaggtccttctggtgtgtctggacccccaggcccaaccggtgttgct
ggtaaagaaggacagagaggagcccgaggtgagcgaggcgccacaggtcgccctggagag
gccggggcctctggacccccaggaccctccggagagaagggtagccttggccccgatggc
cctgctggcccctctggttctcctggaccccctggtgttattggatctcgtggtattgtc
ggtctttctggacaaagaggagagagaggattcggcggtctccccggaccttctggagag
ccaggcaagcagggacccagtgggtctttaggagagcgagggcctcctggacccatgggg
cctcctggactgggtggagctcctggtgaagctggtcgtgagggtaacactggacatgat
ggtgctcctggccgtgacggtccccctggacctaagggagaccgcggtgagtctggcaac
tccggccctcatggggcccctggtgctcctggagctcctggccccattggtccatcgggc
aagactggagatcgtggagaggctggtcccgctggttctgctggtacttccggtcctgct
ggtgctcgtggtggtcaaggtccagctggttctcgaggagataagggtgagtctggagag
gctggagagcgaggcatgaagggacaccgcggcttctctgggatgactggagttcctgga
cctcctggagcccctggtgaccaaggacctgccggaccatctggccctgctggacctcgt
ggatcttctggctctaacggcatggctggtaaggagggtatgaatggtttgcccggacct
gttggacctcctggaccccgaggtcgctctggagaaatgggaactgctggttctcctggt
cttcccggacccccagggcctcctggccccgcaggcatcggcgagccgttcctccccatg
cctcaggtagagaagggtccagatcctatgcgtggaggctacagagccgacgacgccagc
gttcgtgaccgcgacaccgaggtggacaccagcctaaaatctctgagccagaagatcgag
aacatgcgcagccccgagggaacccaggccaaccctgcacgcatgtgccgcgacctgagg
atgagccatccagactggaagagcagttcctactgggtggatcccaaccagggctctcct
ctggatgccatcaaagtcttctgcaacatggagactggtgagacctgcgtcagtccatct
cagaacaccattcccatgaagaactggtacactagcaagaacatccgagagaagaagcac
gtttggtttggagagtccatgcccaatggcttccagttccagtatggcagcgagggctct
gatccagacgatgttaacatccagctgaccttcatgcgtctgatgtccaacgaggcttct
cagaacatcacctaccactgcaagaacagcatcgcctacatggaccagaccacaggcaac
ctgaagaaggctgtgctgctgcagggctccaacgacatcgagatcagagccgagggcaac
agccgcttcacatacagagtcagcgaggacggctgcacgtcacacactggcacatggggc
aagacagtcattgactacaagacaacgaaaacatctcgtctgccaatcattgatatcgct
cctatggacattggtgctcccgatcaggaattcggcgtagaagttggcccggtctgcttc
ttgtaa
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