Sinocyclocheilus grahami (golden-line barbel): 107571815
Help
Entry
107571815 CDS
T04918
Symbol
col12a1
Name
(RefSeq) collagen alpha-1(XII) chain
KO
K08132
collagen type XII alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sgh00535
]
107571815 (col12a1)
Proteoglycans [BR:
sgh00535
]
Extracellular matrix (ECM) proteoglycans
Others
107571815 (col12a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
DUF4998
VWA_CoxE
Laminin_G_2
DUF4992
Motif
Other DBs
NCBI-GeneID:
107571815
NCBI-ProteinID:
XP_016113681
LinkDB
All DBs
Position
Unknown
AA seq
3085 aa
AA seq
DB search
MKIRLCLAAAALFAILLNSVEAQVEPPSDMKFKILNENTVHMSWRRPSSQIQGYRIQVIS
DADDLKDFSLSASATNTSITDLTPDVDYSVSISSYNGAEESIPILGQITIQSSNTSGTRK
TPSETIKCSVSAVTDLVFLVDGSWSVGRENFKFIRSLIGAMAGAFDIGEDKTRVAIVQYS
SDTRTEFNLNQYYRRPDVLRAIKNLPYKGGNTMTGDAMDYLVKNTFTVASGARKGFPKVA
MIITDGKSQDAVGEYAERLRNIGVEIFVLGIKGADEDELKEMASTPHSKHIYNVPNFDMI
SQVQKELITQVCSGVEEQLNFLASGQEDVEPASDLRVTDISSKSMRITWDSSPGDITGYK
LQVFPMIAAAKKQELYIGPTFTMANVRDLSPETEYEISLFALKGLTPSKPQVVNEKTQPV
KVSTECSLEVEVQADIVLLVDGSYSIGLANFAKVRAFLEELVKSFDIGLDKVQISLVQYS
RDPHTEFALNKHDDNAAVLNAVRTFPYRGGSTNTGKAMTYVREKIFIPARGARDNVPRVM
VLITDGKSSDSFKNPANKLRDADVEIFAVGVKDAVRSELEAIANAPADNHVFEVEDFDSF
QRISKELTSSICLRIEQELHNIKKRSLVPPKSLSFSEVSSRSFRTSWTSDGEDVLSYLVR
FRPAADITGDYISLVVPPDTTTTILPNLTPLTTYEVNVIAQYDKGDSFPLTDEETTLEEL
GSVRNLMVSEETVDSFRVSWKAAPGAVLRYRLLYEPVGGGDKLEAETDGSQVTTVLHELL
PVTTYRVTVYPEYASGMGPSMDTEGTTKEVRGSPRDLSVFNETVSSMRVSWRAAPGNVLQ
YHVAYKPDGGERKEMFVKGDTTTALLKNLSPDTEYELFVSARYTSGLGAPLMGTGTTLEE
LGSPTNLVTSDVTENSFVASWTAAPGNVRLYRVTWKSLFSEEAGEKTVPGDITTTVLDGL
TPETRYKVSVYAAYSSKEGEPLHGEETTDVSAAARVLTVSEETERTMRVTWQPAPGNVVN
YRVSYKPQGETHQLASKAPGGTNTLVLRRLQPQTTYDITVVPVYKFGDGRQRQGEGTTLS
QYKAPRNLQTSEPTKTSFRVTWDHAPGDVKGYKVTFHPTGVDMDLGELQVGPYDNTVVLE
ELRAGTKYTVSVFGMFDGGESMPLAGEEKTTLSDAPEPPTFETSDIMCKTTAQADIVLLV
DGSWSIGRLNFKTIRSFIGRMVGAFDIGPDRVQIGLAQYSGDPKTEWHLNSHRTRKELLD
AVASLPYKGGNTMTGLALNYILQSNFKKNVGMRPNSRKIGVLVTDGKSQDDITVNSQNLR
DQGIELYAIGVKNADENELRSIASDPDDIHMYNVADFSFLLDIVDDLTNNLCNSVKGPGG
GPEPPTDLTTSEVTHYSFRATWVGPDGPVEKYRIEYVSTAGGEPQKLLVDGTVTTVVLEN
LTPLTEYIVKVHSVVGEDSSDPLKGSETTLPLSGVRNMNIYKVRSTTMNVRWDAVEGATG
YMLLYDALNATEPSVEQEIRVKGTVTDVQLKKLRPNTAYSVSVFSLSGDYASDPLSDQGV
TLSIPPSGELSITDVTHSTMQLDWDAAPGAVRKYIITYRPEDGEAKELEVDGDVTSRGLD
NLISQTEYDVAVTPVYDSGTGNPMLNQAITDVVPAPKNLRFSQVTQTSFRAHWEHGAPDV
SLYRVGWTKRGENNFQYDILSSEDTTLLLENLEPDTLYDVSVTAIYPDESESEDLLGSQR
TLSKVITPAPSGPPQNLQVFNATTTSLTTKWDHAPGKVQNYRITYVPVAGGRSQSTQVGG
KKNTVILQKLTPDTPYYITVAAIYANGDAKDISGQGKTLPLGSVRNLQVTDPTVSTLNVR
WEPAEGSVRQYRIYYQTVTGGAEDMIQVPGSTTSTVLKNLQSDTEYTVTVVPVYAPGEGK
RMSENGKTLVRTPAKNIRVYNPTTNTLNVLWEPASGDVLQYRVVYTPLSGTRSAQSVLVP
GNTNTALLQQLDSDTGYAVSVVALYADGEGSSVSDNGKTLPRGGPRNLRVYDPTTSTLSV
SWEHAEGPVLQYRIGYAPTTGDPIDEFTSVPGNRNSVILQNLQPDTPYNINVEAIYQDGP
GGRLSGDGKTLGLLEPRNLRVSDEWYTRFRVSWDPVPARVNGYNLVYTPVGTDNTMEVFV
GDVTTHILPNLQPGTTYDLKVYAQYDTGVSGALVGQGTTLYLNVTDLITYNVGYDSFCIR
WTPHRAATSYRLKLNPFNPANRGAQEVTITAAESQYCFDGLTPDALYNATVYTQTPNQEG
PGVSVKEHTLVKPTVPPTPPPTPPPPPTIPAALEVCRGAKADLVFLIDGSWSIGDESFIK
VRQFVFSMIGAFDVISRNGMQVSFVQYSDGAKTEFKLNTYHDKGMVLSALQMVKYRGGNT
KTGAALKHIGEKVFTSDNGMRRTVPKVLVVVTDGRSQDEVKKSAAKLQHAGYSVFVVGVA
DVDTAELRNIGSKPSERHVFIVDDFDAFTKIQDNLITFICETATSTCPLIYLDGFTSPGF
RMLEAFNITDKMFAGMNGVSMEPGSFNSYIAYRLHKDAFISQPTKEIHPDGLPPSYTLIL
LFRLLPDTGKDAFDIWQISDKNNNPEVGLTIDPSSRSISFYNKDSRGENQKVFFDNDQVK
KVFHGSFHKLHISVSPKNVKLNIDCQEVAEKEIKEANNISTDGYEVLGKMVKSGGSRKQS
ATFQLQMFDIVCSLGWTSRDKCCDIPAMRDEVKCPALPHSCTCAQDSVGPPGPAGPPGSP
GTKGPRGERGESGPTGSMGPRGEQGQPGQMGPPGPQGPNGLSIPGEPGRPGPKGDPGDPG
LPGQRGSTGAPGPLGPVGPSGARGPPGNEGPSGPRGPSGPMGPPGSPGMPGITGKPGKPG
DTGFPGPVGMKGEKGERGDTASQNMMRSVARQVCEQLVSRQMSRIDMMLNQIPSNYRSNS
PGPSGPPGPPGNQGPHGEPGQPGPNGFPGNPGLPGPPGERGPPGQSQIGPPGPTGTAGPR
GPPGRQGGPGVRGPPGPSGYCDSSQCVGIPYNGQGYPGPYQPEPDTYVVPIPAQPSEDIE
TQSPGLRNQRGKRSLSRKEAKSIET
NT seq
9258 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaggctgtgtttggctgccgctgcactctttgctatattactgaattcagta
gaggctcaagtggagcctccttcagacatgaaatttaaaatcttaaatgaaaacacagtg
catatgtcatggaggaggccttcgtctcagatacagggctacagaatacaagtcatatca
gatgcagatgatttgaaagatttcagtctttctgcctcagccacaaacacatcaatcacg
gatttaactcctgatgtagactattcggtgtcaatcagttcatataatggcgcggaagaa
agtatccctatacttggacaaataacaattcagtccagcaacacaagtggaacaaggaag
acaccatcagagactatcaagtgttcagtgagtgctgtcacggatctggttttcctggtg
gatggctcttggagcgtgggaagagaaaactttaaattcatccggagtttaattggggcc
atggcaggagcctttgacataggagaggataagaccagagtggctattgtacagtacagc
tcagataccaggacagagttcaacctgaaccaatattacagacggcctgatgtcctacga
gccattaaaaatctgccctacaagggtggtaataccatgacaggtgatgcaatggactat
ttggtgaaaaacaccttcactgttgcatctggagccaggaaaggctttccaaaagtagcc
atgatcatcactgatggaaaatcacaagacgcagttggggagtatgcagaacgcctgagg
aacattggagtagagatctttgtcctgggtatcaaaggagcagatgaggatgagttgaag
gagatggcctccactccccacagcaagcatatctataatgtcccaaactttgacatgatc
agtcaggtgcagaaggagctcatcactcaggtgtgctctggtgtggaggagcagctaaat
ttccttgcaagcggacaggaagatgttgaaccagcttcggacctcagagtaactgacatc
tcctccaaatccatgagaattacgtgggattcgtctcctggtgacatcacaggctataag
ctgcaggtcttccccatgattgctgctgctaagaagcaggagctctacatagggcccaca
ttcaccatggccaacgtcagagacctgtctcctgagacagagtatgagatcagtctgttt
gccctcaaaggtctgacccctagtaagccacaagttgtcaacgagaaaacccagcctgtg
aaggtgtctacagagtgctccctagaggtcgaggtccaagccgatattgtcctcctggtc
gatggctcgtacagtataggactggctaactttgctaaagttagagccttccttgaagag
ctcgtcaaatcttttgacatcggactcgacaaagtgcagatcagcttggttcaatacagt
cgggatcctcacactgagtttgccctgaacaagcacgatgacaatgcagctgtgctcaat
gcagtccgcaccttcccctaccgtggaggctccaccaacactggcaaggccatgacctac
gtaagggaaaagatcttcattccagcccgtggcgctcgtgataacgtgccccgagtcatg
gtgctcatcacagacggcaagtcctccgattctttcaaaaaccctgccaacaaactaagg
gatgcagatgtggagattttcgctgtgggagtcaaggacgccgtgcgctccgagctggag
gcgattgccaacgcacctgctgataaccatgtgtttgaggtggaagactttgattctttt
cagcggatctccaaggaactaacctcatccatctgcctaagaattgagcaggagctccat
aacatcaagaaaagaagtttggttccaccaaagtcgctaagcttctctgaggtctcctcc
agaagcttcaggacctcatggacttctgatggagaggatgtcctgtcttatctggtgcgt
ttcaggccagcggctgacataactggagactacatctctttggtggttcctcctgacacc
accactacgattttgcccaatctcacacccctgaccacttacgaggttaatgttatcgcc
cagtatgataaaggagacagttttcctttgacagacgaggagacgactttagaagaatta
ggctctgtccgtaacctcatggtgagtgaagaaactgtagacagcttccgcgtgtcgtgg
aaagccgctccaggagcagtgctgaggtacagactgttgtatgagccagtgggtggagga
gataaactggaagcagagactgatgggagtcaggtcaccactgtgctccacgaactgctg
cccgtcaccacttaccgtgtcacagtgtaccctgagtatgcaagtggaatgggtccctcc
atggacaccgagggcaccaccaaagaagtccggggctctccacgtgacctgagtgtcttc
aacgagaccgtgtccagcatgagggtctcatggcgggcagctccaggcaacgtgcttcaa
tatcatgtggcctacaaacctgatggtggggaaaggaaagaaatgtttgttaaaggagac
acaacaactgctttgctgaaaaatttgtcgccggacaccgagtatgagctctttgttagt
gcccgttacacctctggcctcggagcgccacttatgggaacaggcaccactctggaagaa
ctcggttcacctacgaatctggttacttcggatgtcactgagaacagttttgtagcatcc
tggactgccgcccctggcaacgtccgcctttatcgggtcacctggaaatccctcttttcg
gaggaagctggcgagaaaaccgtccccggggacataaccaccactgttctggatggactg
acaccagagacccgctacaaggtttctgtctacgctgcctacagcagtaaggagggggag
ccgctgcatggagaggagaccacagatgtgtccgccgctgccagagttcttacagtttca
gaagaaacagagaggaccatgcgagtaacatggcagccagcacccggcaatgttgtcaat
tatagggtatcgtataaacctcagggtgagacacaccagttggcctccaaagcaccaggg
ggcactaacactttagtcctgagacgactgcagccacaaaccacttacgatatcacagtg
gttcccgtctacaagtttggtgatggaagacaaagacaaggagaaggaaccacgttgtct
caatataaagctcccagaaacctacaaacttcagagcccactaaaaccagtttcagggtg
acctgggatcatgctcctggggatgtgaagggctacaaggtcaccttccatcccactggg
gtggatatggacctgggagagttgcaagtaggcccctatgacaacacagtggttctagag
gagctaagggccggcactaagtatacagtgagtgtgtttggtatgtttgatggaggagag
agtatgccactggctggagaggagaagaccaccctctctgatgcccctgaacctccaacc
tttgaaacttcagatataatgtgcaaaaccacagcccaggctgatattgtcctgcttgtt
gatggatcttggagcattggtcgtctgaacttcaagaccattaggtctttcattggtcgc
atggtgggtgcctttgacatcgggccggatcgtgtccagattggtctggcacagtacagt
ggagacccaaagactgagtggcacctaaactcacacagaaccagaaaagagctgctggat
gccgtggccagtctaccctacaaaggaggaaacactatgactggccttgctttgaactac
atccttcagagcaatttcaagaagaatgttggaatgcgtccgaactctcggaagatcggc
gtcctggttactgatggcaagtctcaggatgacatcacggtcaactctcagaacctccgt
gaccagggcattgagctgtatgccattggtgtgaagaacgcagatgagaatgagctgaga
tccattgcttcagatcccgatgacatccacatgtacaacgtggctgacttctccttcctg
ctggacatcgtggacgacctgacaaacaacctgtgtaacagtgtcaagggtccaggagga
ggccccgagccacccactgatctaacgacctcagaagtgacccattactccttccgtgcc
acctgggttggccccgatggacccgtggagaagtacagaatagagtatgtgagcactgca
ggaggagaaccacaaaagttgcttgtcgacgggacggtgacgactgtggtcttggaaaat
ctcactcctctgacggagtacatcgtgaaggttcactcagtggtgggagaggacagcagc
gaccccctcaaaggctcggagacgacattgcctctcagcggtgtgaggaacatgaacatc
tacaaagtgcgctccaccaccatgaatgtgagatgggatgcggtcgaaggtgccacaggc
tacatgcttctctacgacgcccttaatgccactgaaccctctgtggaacaggagatacgt
gtgaaaggaacagttactgacgtccagctgaagaagcttcgtcccaacacggcctacagc
gtgtccgtcttcagcctgtccggcgattacgccagtgaccccctctctgatcagggggtg
accctgtctattcctccatccggtgagttgagtatcacagacgttacccacagcaccatg
cagctggactgggatgctgcgcccggcgctgttcgtaaatacatcatcacttacaggcca
gaggatggagaggcgaaagagcttgaagttgacggagatgtaacatctagaggactggat
aatctcatttcccaaacggaatatgatgtggctgtgactcctgtgtatgattctgggacc
ggaaacccaatgcttaaccaagccatcacagacgttgtccctgctccgaagaacttgagg
ttctctcaagtgacccagaccagtttcagggctcactgggagcacggcgctcctgatgtc
tccctctaccgcgtcggctggaccaagagaggagagaacaactttcaatatgatatcctg
agcagcgaggacactactctccttctggagaacctggagccagacactctctatgatgtt
tcggtcactgccatttaccccgatgagtctgagagcgaagatcttctgggcagccagcgc
acattgtccaaggttattacacccgctcctagtggacctcctcagaacctccaagtgttc
aatgcgactaccacctccctcaccaccaaatgggatcacgctcctggaaaagtgcagaac
tacaggatcacctacgtaccggttgcaggaggaagatcacaatctacacaggttggaggg
aagaaaaacacagttattctgcagaaactgactccagacactccctactacatcacggtt
gctgcaatctatgcgaatggagatgccaaagacatttctggccaaggaaagacattaccg
ctgggcagtgtgagaaaccttcaggtcacggaccccacggtcagcactctgaatgtacgc
tgggagccggctgaggggagcgtacgtcaatacaggatttactaccagaccgtcacaggg
ggcgcagaagacatgatccaagttcctggaagcaccaccagtacagttctgaagaacctg
cagtctgatactgagtacacagtaacagtggtgccagtatacgctcctggagagggcaag
cgcatgtcggagaatggaaaaaccttggtgcggacccctgccaagaacatccgggtttac
aaccccaccacaaacaccctgaacgtgctctgggagccggcctccggagatgtgctgcag
taccgcgtcgtctacactcccctctctggaacccgttccgctcaatctgtgctcgttcca
gggaacaccaacactgccttgctgcagcagctcgattcagacacaggctacgctgtgagt
gtggtggctctgtatgctgacggcgagggctcctctgtgtcagataatggaaaaacactg
ccccgcggtggccccagaaacctgcgtgtgtatgatccgaccaccagcacactgtctgtc
agctgggagcatgcagaaggacctgtgctgcagtaccgcattggctatgcacccaccact
ggagatcccattgatgagtttacaagtgtccctggcaacagaaactctgtcatcttgcaa
aacctgcagccagacacaccttacaacatcaatgtagaggccatttatcaagatgggcct
ggaggacgtctctctggagatggaaaaacattgggtctcctggagcctcgtaacctgcgt
gtttcagatgagtggtacactcgtttccgtgtgtcctgggaccctgtacctgcacgggtc
aatggttataatctggtctataccccagtgggcacggataacaccatggaagtgtttgtt
ggagatgttactacacacatcctgcccaacctgcagcctggcaccacgtatgacctgaag
gtttacgctcagtatgacacaggagtgagcggcgctctggtcggacagggaaccaccttg
tatctcaatgtgactgacctcattacatacaacgtcggctatgactccttctgcatcaga
tggacgcctcaccgagccgccacctcttacaggctaaaactcaatcctttcaatccggct
aaccgtggggctcaggaggtcactatcaccgctgctgagagccagtactgttttgacggg
ctgaccccagatgcgctgtacaacgccacagtctacacacagacccccaaccaggagggg
cctggagtcagtgtcaaagagcacacactggtgaagcccactgtaccgccaacaccacct
ccaactcctccaccaccacccaccatccccgccgcactcgaggtgtgcagaggagccaag
gctgacctggtgttcctgatcgacggctcgtggagtattggagatgagagcttcattaaa
gtccgtcagtttgtcttcagcatgatcggagcgtttgacgtcatcagccgtaatggcatg
caggtgtcttttgtgcagtacagtgatggtgctaaaacagagttcaaactgaacacctac
catgacaagggaatggtgctgtctgcccttcagatggtcaaatacagaggaggaaacacc
aaaacgggtgctgcgctgaagcatatcggagagaaagtgttcacatcagacaatggaatg
aggagaaccgttcccaaggttctggttgtagtaactgacggtcgttctcaagatgaagtg
aagaagagtgctgctaaactacagcatgcaggctacagtgtgtttgtggtgggtgtcgca
gacgtagacaccgctgaactgaggaacattggaagcaagcccagcgagagacatgtcttc
atcgttgatgactttgacgcatttactaagatccaagacaacctcattacgttcatctgt
gaaacggcaacatccacttgtcctttgatttaccttgacggattcacctcaccaggcttc
aggatgctggaagcttttaacatcactgacaagatgtttgctggcatgaacggcgtctcc
atggaacctggctccttcaacagttacattgcatacagactccataaggatgcattcatt
tcccagcccacaaaggaaatccatccagatggtcttcctccctcctacactctgattctc
ctcttccgtcttctccccgacaccggcaaggatgcgtttgatatatggcagatatcagat
aagaacaacaaccctgaggtcgggctcaccattgacccctccagtagaagcatctcattc
tacaataaggactccagaggtgaaaatcagaaagtcttctttgataacgaccaagtgaag
aaagttttccacggcagtttccacaagcttcacatttctgtttcaccgaaaaatgtcaaa
ctcaacattgactgccaagaggtggctgagaaagagatcaaagaggccaacaacatatcc
acagatggctatgaagtccttggaaaaatggtaaagtctggtggttcaaggaagcagtct
gccacattccagctccagatgtttgatattgtctgcagtttaggctggacaagtcgagac
aaatgttgtgatattccagcaatgagagatgaagtcaaatgtcccgctcttcctcactcc
tgcacatgtgctcaggacagcgttggtccgccaggccccgcgggccctccgggcagccct
ggtacaaaaggcccacgaggtgagagaggagagtctggccccacgggttcaatgggccca
cgtggggagcagggtcaaccaggacaaatgggaccaccaggcccacagggccctaatgga
ttgtctattcctggtgaaccagggcggcctggacctaagggagaccccggtgacccaggt
ttacctggacagcggggctcgactggtgctccaggtccgctcggccctgttggaccttct
ggagcaaggggtccaccaggaaatgaaggcccgtctggaccaagaggtccatcgggacca
atgggaccaccaggatcacctggaatgccaggaattacaggaaaaccaggaaaacctgga
gacactggcttcccgggacctgttggcatgaaaggagagaagggtgaaaggggagacact
gcgtcacagaatatgatgcgctctgtagcaagacaagtctgtgaacaattagtcagcaga
caaatgagcagaatcgatatgatgctgaaccagatccccagtaactacaggagtaatagt
cctggaccttctggacctccaggcccacctggcaaccagggaccccatggagagccaggt
cagcccggacccaacgggttcccaggaaatccaggtttgcctgggcctccaggagaaaga
gggccaccagggcagtcccagataggaccccctggccccacaggcacagcgggacctcgt
ggcccaccagggcggcagggtggacccggagtcagaggaccacctggaccttcaggatac
tgtgactcctctcagtgtgtaggcatcccttacaatggacagggttacccaggcccctac
cagccagaacctgacacctacgtagtgcccataccagcccagccgtcggaagatatcgag
acacagtcaccaggtttacgaaatcagcgtggaaaaagatcgctatcaagaaaggaagct
aaaagtatagaaacatag
DBGET
integrated database retrieval system
