Sinocyclocheilus grahami (golden-line barbel): 107572781
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Entry
107572781 CDS
T04918
Symbol
pan2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107572781 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107572781 (pan2)
Enzymes [BR:
sgh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107572781 (pan2)
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107572781 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
107572781 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
107572781
NCBI-ProteinID:
XP_016114706
LinkDB
All DBs
Position
Unknown
AA seq
1199 aa
AA seq
DB search
MMNFEGLDPGLGEYTPGLDSSMDPRLDPALLQGVELDPDALAVPVSESMHIVEGMYSELH
SVAAEVGIPVTATHFDLQEELLWMGNHRGHASSFFGPTMGRYSSFQVHMTDDIRHIQSMD
TGVLFLTKNNLKCLTRGGLIMFDYTTEEGADMHSLILTDNNTLLMGGLQNYVAELDLTTV
QETQKFTVEVPGVAIMRQSNRFFFCGHTSGKVSLRDLRTFKMEHEFDAFSGSLSDFDIHG
NLLAACGFSSRGLNGLSCDRFLMVYDLRMMRAITPLQVHVDPLFLRFIPTYTSRLAIISQ
TGQCQFCEPTGLANLADIFHVNTVGQLLMSFDVSSSKQALSFGDSGGCVHLWSSAPEVSF
NSYSRETELALPCLVDSLPQLEWNHELMPLSLLPMPLTSTEPLLSDWPTSLITPSPRRAP
PVDPEILRTMKTVGFIGYAPNPRTRPRNQVPYKIKDTELEYDSYNQVPESPIGRDEEPHL
YMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCL
VQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLILADSDEQT
GKARLGRLIQSWNRFILAQLHQETLEQEGPQAYRGASSSTLGSSGESVIGRLFGCEVENS
SLCRCGKETVRSSLTLLFTIHYPEQSSLDKMIEEYDFAEILKKSICLEQSTQAWCDNCEK
YQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKAQTEYAYNKALKKEAAEPPKPKEPLPT
EWCLEEELCSVEGLTFDTQAEDMRHVWIPLSLKMCISKTQGLEVSSLSEGVELTESEEAE
GMSVYDLVVIVSHIQDARTGGNLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKAE
SAQFDVNWKVPAVLYYVKRNYHPKYDLRIKNPINASVLLTEASLARKQRKSHATFIPLMV
NEMLQAADLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQGTNEGVPFI
DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTGVRFVGHGLQ
KDFRVINLMVPKEQVIDTVYLFHMPRKRMISLRFLAWYFLDLNIQSETHDSIEDARTALQ
LYRKYLELSHNGGQEEFRKVLKALYEKGRKLDWKVPDIDSADGQGSPKSTAVFPSVMGL
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgagggtctggacccgggtttgggcgagtacacgcccggcctggactct
tcaatggacccgcggctcgacccagcgctactgcagggcgtagagctcgaccccgacgcg
ctggctgttcccgtgtccgaatccatgcacatagtggagggcatgtactcggagctgcac
agcgtggctgctgaagttgggatccctgtgacggcaacacattttgatctgcaggaggag
ctgctgtggatggggaaccaccggggacatgcaagttccttctttggtccgacaatgggc
cgctactcctctttccaggtgcacatgaccgatgatattcgccacatccagagtatggac
acaggggtgctgtttctgaccaaaaacaacctcaaatgcctcacgcgaggaggtttaatt
atgtttgattatacaacggaggagggtgctgacatgcacagtttgattctgaccgataat
aacacattgttaatggggggtctgcagaactatgtggccgaattggacctcacaacagta
caggaaacacaaaaatttactgttgaggtacctggagtcgccatcatgagacagtccaat
cgcttcttcttttgtggtcacacatctggcaaggtgtctctgcgtgatctacgcacattt
aaaatggagcacgaatttgacgcgttctctggcagcctgtctgatttcgacatacacggt
aacctgttggcggcgtgtggcttctcgagccgtggcctgaatggactgtcatgtgaccgg
ttcctcatggtgtacgatctgcgcatgatgagggccatcaccccactgcaggtccacgtg
gatccccttttcctccgcttcatccccacatacacctcccgcctggctatcatttcacaa
acaggtcagtgtcagttctgcgagcccaccggcctggccaatctggctgatatcttccac
gtcaacactgtggggcagctgctgatgagctttgatgtgtcctccagcaaacaggctctc
tcctttggggactctggtggctgtgtgcacctgtggtccagcgccccagaggtgtccttt
aacagttactccagggagacagagttggcgctaccctgcctggtggactccctgccccag
ctggagtggaaccatgagctcatgcctctctctcttctacccatgcccctcaccagtacc
gagcccctgctctctgattggcccacctcccttatcacacccagccccagacgggctcct
ccggtagatccagagattcttaggactatgaaaactgtgggctttattggatacgcgccc
aatcctagaacccgtcccagaaaccaggttccttataagattaaagacacagagcttgag
tatgacagctataatcaggtcccggaatctcctattggtcgagatgaggagccgcatctt
tacatggttccaaagaaatacaggaaggtcaccattaaatattccaaactgggactggaa
gactttgattttaagcactacaaccggactttgtttgctggtttggagcctcacataccc
aacgcttactgcaactgcatgatccaggtgctgtacttcctggagccagtcaggtgcctg
gtacagaatcatttgtgtcagaaggagttctgtctggcctgtgagctgggattcctgttc
cacatgctggacttgagcagaggagacccctgccaggccagtaattttctccgggctttc
cggacaatcccggaggcgtcagcgttaggtttgatcctagcggactctgatgagcagaca
gggaaagcccgtctaggccgtctcatccagagctggaaccgtttcattcttgcacagcta
catcaggaaacactggagcaggaagggccgcaggcatacagaggagccagcagcagcacg
ctgggttcctctggggagtctgtgattggccggttgtttggctgtgaagtggagaacagc
agtttgtgtcgctgtggaaaggagacggttcgctcctccttgactctgctgtttaccata
cactaccctgagcagagctctctagataagatgatagaggaatatgactttgcagaaatc
ctaaagaagagtatatgtctggagcaaagcacacaggcctggtgtgacaactgtgagaaa
taccagccaacagtgcagaccaggaacattcgctgtctgcctgatgttctggtgatcaac
tgtgaggtgaacagcgctaaggaagcagagttctggaaagcacagactgagtatgcgtac
aacaaagctctaaagaaagaagcagctgaacctcctaaacccaaagagcctttaccgaca
gaatggtgtttagaggaagagctgtgcagcgtggagggcttgacctttgacactcaagcg
gaggacatgaggcacgtgtggatccctctcagtctgaagatgtgcatcagtaagactcag
ggcctggaggtcagcagcctgtctgagggagtggagctgactgaaagtgaagaggcagaa
ggaatgtctgtctatgacctggtcgtcatcgtatctcatatccaggatgctcggaccgga
gggaacctggtagcacatatcaaagtgggcgagacctaccatcaaaggaaagagggagta
acacaccagcagtggtatctgttcaatgattttctgattgagcccattgacaaggcagaa
tcagctcagtttgatgtgaactggaaggttcctgctgtactttactacgtcaagaggaac
taccatcccaagtatgatttgcgaattaagaaccctattaatgccagcgttctgctgacg
gaggcctcgttggcacggaaacagaggaagagtcacgccaccttcatacctctaatggta
aatgagatgctgcaggctgcagaccttgtgggattggatgcagaatttgtcacgctcaac
caggaagaggcagaactgcgcagtgacgggaccaagtccaccattaagcccagccagatg
tctgttgctcgtatcacatgcgtgagaggccagggaaccaatgagggagtgccgttcatt
gatgactacatatcaacacaggaacaggtggtggactacctgacccaatactctggtatc
aaacctggagacctggatgcaaagatttcctctaaacatttgactactctgaaatctaca
tatttgaaattgcgatttcttatcgacactggcgttcgctttgtcggccacgggttacag
aaagatttccgggtcataaacttaatggttccaaaagaacaggtgattgacactgtctac
ctcttccacatgcctcggaaacgaatgatttctctgcgtttcctcgcgtggtactttctc
gatctgaacattcagagcgaaactcatgatagtatcgaagatgcacggactgccctacag
ttgtacaggaagtacttggagctgagtcataacggaggacaagaggagttccggaaggtt
ctcaaggctctctatgagaaaggacgcaagctagactggaaagttccagacattgactct
gcagatggtcaaggtagcccaaaaagtacagccgtgtttccctctgtgatggggttatga
DBGET
integrated database retrieval system
