KEGG   Sinocyclocheilus grahami (golden-line barbel): 107574130
Entry
107574130         CDS       T04918                                 
Name
(RefSeq) collagen alpha-1(II) chain-like
  KO
K19719  collagen type II alpha
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510  Focal adhesion
sgh04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    107574130
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    107574130
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sgh00536]
    107574130
Glycosaminoglycan binding proteins [BR:sgh00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107574130
SSDB
Motif
Pfam: Collagen COLFI VWC TILa
Other DBs
NCBI-GeneID: 107574130
NCBI-ProteinID: XP_016116082
LinkDB
Position
Unknown
AA seq 1490 aa
MILLVDSRTLLLFVTTLVAFLAVVKCQEEDDQDPGSCTQDGQFYRDKDVWKPEPCRICVC
DTGAVLCDEIICEELKDCLKPEIPFGECCPVCAADRPSSPGLPGAKGQKGEPGDITDVVG
PRGPAGPMGPPGEQGPRGDRGEQGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPNGAPGPQGFQGNPGEAGEPGSFG
PMGSRGPSGPPGKPGDDGEAGKAGKAGDRGPLGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGESGATGSKGEAGSPGESGAPGPMGPRGLPGERGRPGSSGAAGAHGNDGSPGAAGPPG
PVGTAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGVPGSSGPSGLSGNPGIDGLPG
AKGSVGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDLGLAGFKGEAGPKGEIGNAG
PQGAFGPAGEEGKRGPRGEPGALGPVGPSGERGAPGNRGFPGQDGLAGPKGALGERGAPG
GSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARG
QPGVMGFSGPKGGNGEAGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGVGPQGLQG
ARGLPGTPGTDGPKGAVGPAGSPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGEKGPEG
APGKDGARGLTGPIGPHGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPFGPAGFAG
PPGADGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATG
FPGSAGRVGPPGSNGNPGPAGPAGPPGKDGPKGVHGDGGPPGRPGDAGLRGPAGTPGEKG
DPGEDGPHGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRG
PPGPVGAPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPAGAPGAPGGTGAPG
PVGPTGKQGDRGEAGPKGPAGSLGPAGARGMPGPQGPRGDKGEAGDSGERGQKGHRGFTG
LQGLPGPPGQPGDQGASGPAGPGGARGPPGPVGPAGKDGTNGLPGPIGPPGPRGRSGETG
PAGHPGNPGPPGLPGPPGPGIDMSAFAGLSHPEKVPDPLRYMRADQATEGNIQHDAEVDA
TLKSLNNQIENIRSPDGTKKSPARTCRDLKHCHPDWKSGEYWIDPNQGCTVDAMKVFCNM
ETGETCVHPKPANIPRKTWWTSKGVERKHVWFGEAMNGGFHFGYGDDNLAPNTASIQMIF
LRLLSTEASQNLTYHCKNSVAYMDEATGNLKKALLLQGSNNVEIRAEGNSRFTYSVLEDG
CKKHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq 4473 nt   +upstreamnt  +downstreamnt
atgatcctgttggtggattctaggactttactgctatttgtgacaacactagtcgcattt
ttggccgttgtcaaatgccaagaggaggatgaccaagatccaggcagctgtacgcaggac
ggacagttctatagggacaaggacgtgtggaaaccagagccgtgtcgcatctgtgtttgt
gacaccggcgcggtcctttgtgacgaaatcatctgtgaggagctgaaagactgtctcaaa
cccgagatcccgtttggggagtgctgtccagtctgtgccgctgaccggccttcctcccct
ggcttgccaggtgctaagggacaaaagggggaaccaggagacataacagatgttgtggga
ccgaggggaccagccggtcctatgggaccaccaggagaacaagggccgcgaggagacaga
ggagagcagggggagaagggaaatccaggcccccgtggcagagatggtgagccagggacc
cctggaaaccctggccctcctggaccgcctgggccaaacggaccgccaggcctcggtgga
aactttgctgctcagatggctggtggatttgatgacaaagctggaggagcacagatggga
gtgatgcaaggaccaatgggtccgatgggtcctcgaggaccaccaggccccaatggagct
cctggcccacaaggatttcaaggcaaccctggagaagccggagagcccggatccttcggc
ccaatgggttctcgtggcccctctggtcccccaggaaaaccaggagatgatggggaagca
ggcaaagctgggaaagctggtgaccgtggacctctcgggcctcagggagctcgtggattc
ccaggaacaccaggtctacctggaatcaagggacacagaggttattcaggtcttgatggt
gctaaaggagagtccggagccactgggtcaaaaggtgaggccgggtctcctggagaaagt
ggtgctcctggaccaatgggcccacgtggtttacctggtgaacggggacgtccaggatca
tccggagctgctggtgctcatgggaatgatggttcacccggcgctgctggtcctcctggt
ccagttggtacggctggcgctcccggtttcccaggatcccccggtgctaagggtgaagca
ggacctactggagcccgtggacctgagggagcacaaggaccccgcggagagtctggtgtc
cccggatcttcaggaccttctggactctctggtaaccctggtattgatggcctgcccgga
gccaaaggatcagtgggtgctccaggcatagctggcgctcctggtttcccaggccctcgt
ggccctcctggacctcagggagcgactggacctctggggccgaagggacagtctggggat
ctgggtctcgcagggttcaagggtgaggctggtcctaaaggagaaattggtaacgctggg
cctcaaggtgcctttggccctgccggagaggaaggtaagcgaggacccagaggagagcct
ggtgctcttggacccgtcgggccgtctggagagagaggagctcctggtaatcgaggtttt
cctggacaagatggtctggctggtccaaagggtgctctgggcgagcgtggagctccagga
gggtcagggccgaagggagccagcggagatcctggccggcctggagaaccgggtctgcct
ggtgcacggggtctgacgggacgtccaggtgatgctggtccacagggcaaagttggtccc
tctggcgctgctggtgaagacggtcgaccaggacccccaggccctcagggtgctcgcggt
cagcctggagtgatgggattctctggacccaagggtggcaatggtgaggctgggaagtct
ggagagaagggactcgctggagctcctggtttgcgtggtctgcccggtaaagacggtgag
acgggtgctgccggaccccctggacctgctggtcctgcaggagagagaggagagcagggt
cagcccggaccctctggctttcagggtctgcccggacctcctggcccccctggtgaaggc
ggtaaacctggtgatcagggtgttccaggagaggctggtgccgcaggggccaccggacca
cgtggtgagcgtggtttcccaggagagagaggaggtgtggggccgcagggcctccagggg
gctcgaggtcttccaggaactccaggaactgacggacccaagggtgccgtcggcccagcg
ggatctccaggtgctcagggacctccaggactacagggaatgcctggagagagagggaca
tctggcattcctggaccaaagggtgacagaggtgacaatggtgagaaaggacctgaagga
gctcctgggaaagatggcgcaagaggtttaacgggtccaatcggcccccatggtcctgcg
ggacccaacggtgaaaagggagaatctggacctgcaggaccgtctggagctgctggtact
cgcggtgttcctggtgacagaggagagactggtccttttggtcctgctggttttgctggt
ccacctggtgcagatggacagcctggcgttaagggagagcagggtgaaggtggacaaaag
ggtgatgctggtgcaccgggccctcaggggccttctggagctccaggtcctcagggacca
actggtgtgtctggaccaaaaggggctcgcggtgctcaaggacctcctggtgccacaggt
ttccccggatccgctggtagagttggacctcctggatccaatggtaacccgggtcctgct
ggtcctgctggtcctcctggtaaagatggtccaaagggtgtgcatggtgacggtggacct
cctggaagacccggtgacgctgggctgcgtgggccggctgggactcctggcgagaaggga
gatcctggagaagatggccctcatggtccggatgggcctgcaggtcctcagggtctggct
ggccagcgtggtattgttggacttcctggacagcgtggtgaaagaggtttccccggcctg
cctggaccctctggtgagcctggtaaacaaggagctcctggtggacctggagaccgtgga
cctcctggacccgtgggagcgcctggtctgacgggacctgctggggaacctgggagagag
ggcaatcccggatctgatggtcctcctggccgagacggttctgcaggaataaagggtgac
agaggtgacactggtccagctggcgctcctggtgctccaggtggtactggtgctcctggt
ccagtcggacccaccggcaaacagggagacagaggagaggccggacccaaaggacctgct
ggatctctggggcctgctggagctcggggaatgcctggtccacaaggcccgcgtggagat
aagggagaggctggcgattcaggtgagagaggacagaaaggacacagaggtttcactgga
cttcaaggtctgcctgggcctcctgggcaacctggtgaccaaggagcttctggacctgct
ggacccggtggagcaagaggacccccaggccctgttggtccagctggaaaagatggaacc
aatggtttgcctggacccatcggaccccctggacctcgtggccgttctggagagactggg
ccagctggccacccaggaaaccctggtccccccggtctccctggcccaccagggcctggc
atcgacatgtctgctttcgctggtctgtctcatcctgaaaaggttcctgatcccttgagg
tacatgagggcagaccaagccaccgaaggtaacattcagcatgatgcagaggtcgatgcc
actctgaaatccctgaacaaccagatcgagaacatccgcagtcctgatggtactaaaaag
agcccggcccggacctgcagagacctgaaacactgccacccagactggaagagcggtgaa
tactggattgatcctaaccagggctgcaccgtagatgctatgaaggtgttctgcaacatg
gagaccggcgagacctgcgttcatcctaaacctgccaatatcccacgcaagacctggtgg
acttccaagggtgtggagcgcaaacacgtttggtttggagaagccatgaatggtggattc
cattttggctatggagacgacaatctggcacctaacacagcaagcattcagatgattttc
ctaagactgctgtccacagaggcttcgcagaacctcacctaccactgcaagaacagcgtt
gcctatatggatgaggccactggcaacctgaagaaagctctgctgctgcagggatccaat
aatgtggaaatccgagctgagggcaacagccgcttcacatatagtgttcttgaggatggt
tgcaagaaacacacaggacaatggagcaagacggtcatcgagtacaaatcccagaagact
tcacgcctacccattgtggacattgcgcctatggatattggaggagcaaatcaggaattt
ggagtggatgtgggtgccgtctgtttcttgtaa

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