Sinocyclocheilus grahami (golden-line barbel): 107574292
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Entry
107574292 CDS
T04918
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107574292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sgh03000
]
107574292
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107574292
04121 Ubiquitin system [BR:
sgh04121
]
107574292
Enzymes [BR:
sgh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107574292
Transcription factors [BR:
sgh03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107574292
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107574292
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107574292
Ubiquitin system [BR:
sgh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107574292
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-RING_2
zf-CCCH_2
Nup35_RRM_2
DZR_2
RDD1
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
107574292
NCBI-ProteinID:
XP_016116224
UniProt:
A0A672SGU5
LinkDB
All DBs
Position
Unknown
AA seq
765 aa
AA seq
DB search
MSRSPELKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADAEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVI
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKSNPNFLQTSACGEKSKSKPNSTQRPNSTNKEGWPSLQNYGKMVNGLTTEHRKSP
PLFDCLTDSDHMTPDEPDPEQGTEQNTGLPPFPSALEPTSPIGKQSESINMGNGETISQT
SSSDSPSPPPGLTKPSLVVPISVAKLTARSPFEGAAAESQSLFSDNSNFRHPNPIPSGLP
PFSSSPQGASDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSAKQQQQQDDDLGFDPF
DITRKALADLIEKELSVEEHSPLSPNPSSHQRRLPHLQHRGLYNSFSLPQHMAARHPWMG
LPTRNNLTHLNHTASAAHSHFLDLSMPAQHHSTGLGGIPISENNGSVESINVKEWQDGLR
ALLPNININFGGLPNSTSSSSSSSTSSVNHIGVPVGSTGVSHSLSWDSTASWMDPAIITG
IPASTGNSLDCLQDDNPPHWLKSLQALTEMDGPPSSSALPQPPHTGLLDAAAQLSLHRAA
WAPYLPPPTLTPSQFHSPPPGFQTAFRPPVQTATDILQSAGIDRH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcagtcctgagctgaaagaagaccccatggagtgcccactgtgcatggaaccg
ctggagattgacgatgtcaacttcttcccctgcacctgcggctaccagatctgccgcttc
tgctggcaccgcatccgcacagatgagaacggcctctgccctgcttgcagaaagccttac
ccagaggatccggcagtatacaaacctctgtcacaagaggagatccagaggataaagaac
gagaagaagcagaagcagaacgaaaagaagcagaaggtgacggagaaccgcaagcacctg
gccagtgtccgtgtggtgcagcggaacctcgtatttgtcgtgggactttctcaaagactt
gcggatgccgaggttctaaagcgcccggaatatttcggaaagttcggcaaaatccataaa
gtggtcatcaataacagcacatcatatgcaggttcacagggtcctagtgccagtgcctat
gtaacttacattcgttcagaggatgcccttagagcaatacagtgtgtgaacaatgtcata
gtggatggtagaacactcaaggcttctttaggtacaacaaagtactgcagttattttctc
aaaagcatgcagtgtcctaaaccggactgcatgtatttacatgaactgggggatgaagcg
gctagttttacaaaagaagaaatgcaggctgggaaacatcaagagtatgaacaaaaatta
ctccaagacctttacaaatcgaaccccaactttttacaaacctcagcatgtggagagaag
tcgaagagcaaacccaattccactcagagacccaatagtaccaataaagaagggtggccc
tcattacagaactatgggaaaatggttaacggtttaaccacagagcatcgcaagtcccct
cctcttttcgactgcctaacagactcagaccacatgactccagatgaaccagaccctgaa
cagggaacagaacagaacacaggccttccacctttcccatcagccttagagcctaccagt
ccaattggcaaacaatcagaatccataaatatgggaaatggggaaactatatcacagaca
tccagtagcgattccccatctcctccacctggccttactaaacccagcctcgttgtgccc
atcagcgtggccaaactcacagcgcgctcacccttcgagggggcggcagcagagtctcaa
tctcttttctcagacaacagcaatttcagacatcccaaccccatccccagcggcctgccc
cccttctccagttcaccccagggagcctctgactggcccatgactccagaaccacagagc
cttttcacctcagacactatcccagtgtcgtcctctactgattggcaggcggccttcggt
tttggctcttcggccaagcagcagcagcagcaggacgatgacctcggctttgacccattt
gacatcacacggaaggccctggccgacctcatagagaaagagctgtcagtcgaggagcat
tcccccctctctcccaatccctcttcccaccagaggcgccttcctcacctccagcacaga
ggcctctataactccttcagcctgccccaacacatggccgcacgccacccctggatgggc
ctccccacccgcaataacctcacacacttgaaccacacggcctcagctgcgcacagccat
ttcttagacctgagcatgccggcccagcaccacagcaccggccttggggggattcctata
tcagaaaacaatggctctgtagaaagtataaatgtgaaagagtggcaggacggactgcga
gcactcctaccaaatatcaacatcaacttcggaggcctcccgaactctacctcttcctcc
tcctcttcctccacttccagtgtgaaccacatcggggtgccggtaggctcgactggagtc
tcgcacagcctcagctgggacagtacggccagttggatggatcccgccatcatcacaggt
atcccagcatctacaggcaacagtttggactgtctccaggatgacaatccgccacactgg
ctcaagtcgctgcaggcactcacagagatggatggacctcccagctccagcgcactccca
cagcccccgcacaccggcctcctggacgcagcagcccaactctccttacacagagccgcc
tgggccccttacctccctcctcccacactaaccccaagtcagttccactccccacctcca
ggctttcagacagccttcagacccccagtgcagacggccacagacatcctacagagtgcc
ggtattgaccgtcactaa
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integrated database retrieval system
