Sinocyclocheilus grahami (golden-line barbel): 107575087
Help
Entry
107575087 CDS
T04918
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107575087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107575087
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107575087
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107575087
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107575087
NCBI-ProteinID:
XP_016116986
LinkDB
All DBs
Position
Unknown
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVCLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVTSTSHTPSIQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGP
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTP
KAPQPGLASTLVTTATTTTTAAKTTIITRPTAVGPKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKPPE
ELLPIVTTDPVPFTAAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINININIP
LLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDLE
QHLHAIPPALAMNPQTQAIRSLLEAVVLARNSRDGIAALGLLQKAVEGLLDATSGADPDL
LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVSHITEADLFHTIETLMRTNAHSRA
NAPEGTPSLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLR
EWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQ
QLPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEASNTVTKINLLNKVGMLTMVLGIVVG
VLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggattttagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctgatccaggagtgtgtgtgt
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttcttaag
ctaagcaaggttcaggaggtgatttttggccttgctctgttgaactccagtaacgcagac
ctccgagggtttgctgctcaatttgtgaagcagaagctccctgacctcctccgctcgtac
gtggacgcagacctcggaggtaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggccagaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgttgtaccctgacaaacgggacattctcatggaccggatcctg
ccagactctggagaattgaacaagaccatgatggagagttcacttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacagccagtcaggtggccagagtgctgggcatgatggcccgcact
cactctgggctatctgatggcatcggcctgcagtccatctcaaatccagtgggcggtggg
atctggagtgatgggaaggacaagagtgacggctctcaggctcacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gagctggaccacccaggcttcctgatccgtgacagtaaggggcttcagatagtggtctat
gggatccagaggggtctgggaatggaggtgttcccggtggatctcatctacagaccatgg
aagcatgcagaaggacagctgtcattcattcagcactcgctgatgagtcctgaagtgttc
tgctttgccgactatccctgtcatactgttgccattgacatactgaaggccccgcctgag
gatgacaacagagaaatagccacatggaagagcttggacctagtggaaagcctcttgcgc
ctctctgaagttgggcattatgaacaggtgaagcagctcttcagcttccccatcaagcac
tgcccggacatgctagtgctggcacttctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctctaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctgatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggccaagctatctcgt
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcatggggaaccattcatccaggcatgtgtcacattc
ctgaagagacgctgtccctctatcatgggtggtttggccccagagaaagaccagcccaaa
agtgctcaacttcctcctgaaacactggctaccatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctgtcagagacaatcttgactatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagctcccagc
accagcagcttagatgctatctcacctgtgcagatggatcctctctctgcgatgggctct
ttgagtctaggtgtcacgtccacctcccacaccccgagcatccaaggattccccagcctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctgcccaac
ccgaaccccagcacagctttcccaggaatcaaccccctctcttctcagctccaaggtcct
ctgagcacaagcttgactgggattggctcaggtttgggcatgcccgccgtcagcagtgac
cccttcggcactaggaagatgagcacaccggggctaaacccgcccaccttccagcagact
gacctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgatgag
gcaaatagctacttccagcgtatctacaaccatccgccgcaccccacaatgtccgtggat
gaggtgctggaaatgctgcagagatttaaggactcaaacatcaagcgagaacgggaagtt
tttaactgcatgctgaggaatctgttcgaggaataccgattcttccctcagtatccagat
aaagaactgcacatcaccgcttgcctcttcggggggatcattgagaagggcctggtcacg
tacatggcgctgggcttagctttacgatatgtcctggaagccttacgcaaacctttcgga
tcaaagatgtattactttgggatcgctgcactagatagatttaaaaatagactgaaggac
tatccccagtactgtcagcacttggcgtcaatagcccatttcctgcagtttccgcaccat
ttacaagagtatatagagtatggccagcagtccagagaccctcctgtgaagatgcaaggc
tccattactacccctggcagcctggctttagcccaggctcaagctcagtctcagaccccc
aaagccccacaacctggcctggccagcaccttagtgaccacagccaccacaaccaccacc
gctgccaaaaccacaatcatcacgagacctacagctgttggaccgaagaaagacgtgcca
ccttcaatcaacaccacaaacattgacaccttgttagtggctacagaccagactgaaagg
atcgttgagcccccagagaatgttcaggagaagattgcgttcatctttaacaacttgtcc
caatcaaacatgacccaaaaggtggaggagctgaaagagactgtaaaagaagaattcatg
ccctgggtctctcagtacctggttatgaagcgtgtcagcattgagcctaacttccacagc
ctgtattctaatttcctggacacactgaaaaacccagagtttgttaagatggttctcaat
gagacgtacagaaacatcaaggtccttcttacctctgataaggcagctgctaacttctca
gatcgatcactgctgaagaatttgggtcactggcttggaatgatcaccctagctaaaaac
aaacccatcctgtacacagacctggagctgaaatcgctcttgctagaggcttatgtgaaa
ggccaacaggagttactgtatgtcgtcccctttgtggccaaagtcttggaatcaagtctg
cggagtgtgatcttcagaccgcagaacccttggaccatgggcatcatgaatgtactggct
gagctccaccaggaacatgacttaaagcttaacctcaagtttgagattgaggtgctctgc
aagaatctgtctttggatatcagtgagctgaaaccaggaaacctactgagagacaaagaa
aagctgaagaacttggaggagcagctctctgcaccaaagaaagagaccaagcctcctgaa
gagctgcttcctatagttacaacagatcctgttccatttacagctgctccctcaactcca
gccaccaccacgacctgtacggccactgggccgcccacaccacaattcagctaccatgac
atcaatgtgtacgccctggctggcctggctccgcacatcaacatcaatattaacatccca
ctactgcaggcccaccctcagctgaaacagtgtgtaagaccagcaattgagcgtgctgta
caggaactggtgcacccagtggtggaccgatccatcaagatcgccatgaccacctgtgag
caaatagtcaggaaggacttcgcacttgactctgaggagtctcacatgcgtgtggccgcc
caccacatgatgcgtaacctgactgccggcatggccatgatcacctgcagagagccgctg
ctcatgagcatcgccaccaacctgaagaacagctttgctgcagctcttagggctcccaca
ccccagcagagagagatgatggaagaggcagctgctcgcatcgcacaggataactgtgag
cttgcttgttgctttatccagaagacagcagtggagaaagctggacctgagatggacaag
agactagcaactgaattcgagctgaggaagcacgctcgccaagaaggccgtcgctactgt
gaccccatggtgctcacctatcaggcggagcgcatgccagagcagatcagactgaaggtt
ggtggagtagatcctaaacagctggctgtttatgaggagttcgcccgaaatgttccaggc
ttcctacccagtaacgacttgtctcagcccactggtttccttgcccaaccaatgaagcaa
caggcatggcccactgatgacgtggctcacatctacgataagtgcatttcggacctggag
cagcacctgcacgcaattccacctgcgctggccatgaacccgcagacccaggccatacgc
agccttctggaggccgttgtattggctaggaactcccgtgatggcatcgctgccctgggc
cttttgcaaaaggctgtggagggtctgcttgatgccaccagtggtgctgatcctgatctg
ctgctgagctacagggagtgccatctgctggtgctgaaagccctacaggatggtcgtgcc
tacggcccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagatgaa
tacaagtacaacgttgaggccgtggagctcctcatcagaaaccacctggtcaacatgcag
cagtatgacttacacctggctcagtccatggagaacgggctcaactacatggccgtggca
ttcgccatgcagctggtgaagatcctgctggttgacgaacgcagcgtgagtcacatcact
gaagcagatctcttccacaccattgagaccctgatgaggaccaacgctcactccagagca
aatgctcctgaaggaacccctagtttgccccagctgatggatgttgtccgctccaactac
gaggccatgatcgatcgtcaccatggtgggccgaacttcatgatgcactctgggatttct
caagcctctgaatacgatgacccaccaggccttagagagaaggcagagtacctgctgaga
gaatgggtcaacctgtaccactcggcagctgcaggaagagacagcaccaaggcattctct
gcgtttgttggccagatgcaccagcagggcatcctgaagaccgatgacctgatcactcgc
ttcttccggctgtgcacagaaatgtgtgtggagatcagttaccgtgctcaagctgaacag
cagcttccaaccaccagccccgccattatcagggccaagtgctaccataacctggatgct
tttgttcggctcattgcgcttcttgtcaaacactctggagaggcctccaacacagtcacc
aaaatcaacctgctcaacaaggttggaatgcttacaatggttctaggcattgtggtgggt
gtattgatccaggatcacgatgtgaggcagacagagttccagcagcttccgtaccacaga
atcttcatcatgctcctgctggagcttaacgcaccagagcatgtgctggagaccatcaac
ttccagacgctcactgccttctgcaataccttccacatcctgaggccgactaaagcacct
ggttttgtctatgcttggctggaactcatctcacaccgtatcttcattgccaggatgctt
gcacataccccacaacagaagggttggccaatgtatgcccaactgctgatagacttgttc
aaatatcttgcacccttcctaaggaatgttgaactcaacaaacctatgcaaattctttac
aagggaacacttcgtgtgctgcttgtcctgctacatgacttccccgaattcctgtgtgac
taccattatggcttctgcgacgtcatcccgcctaactgcatccagctgaggaacctgatc
ctgagtgccttcccccgcaacatgaggcttccagaccccttcacccctaatctgaaggtg
gatatgctgagtgagatcaacattgctccccgcatcctcactaacttcaccggtgtgatg
ccgtcccagtttaagaaggatcttgactcctacctcaagacccgttctcctgtcaccttt
ctttctgagctgcgcagcaacctgcaggtgtccaacgagccaggcaaccgctacaacatt
cagctaatcaatgctctggtgctgtacgttggaacccaggccattgcccacatccacaac
aagggcagcactccctccatgagcaccatcactcactcggctcacatggacatcttccag
aacctcgcagttgatctagacactgagggccgctatctgttcctgaatgcgatagccaat
cagctgcgttatccaaacagccacacacactactttagctgtaccatgctgtatctgttt
gccgaggccaacgctgaagccattcaagagcagatcaccagggtcctgctggagaggctg
attgtgaacaggccacacccgtggggtctgctcatcacctttattgagctgatcaagaac
cctgcctttaagttctggagccatgattttgtgcactgtgccccagagatcgagaagttg
ttccagtcggtggctcagtgctgcatggggcagaagcaggcccagcaggtgatggaggga
acaggtgccagttag
DBGET
integrated database retrieval system
