Sinocyclocheilus grahami (golden-line barbel): 107575748
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Entry
107575748 CDS
T04918
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107575748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107575748
Enzymes [BR:
sgh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107575748
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107575748
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
R3H
G_path_suppress
FMP23
Motif
Other DBs
NCBI-GeneID:
107575748
NCBI-ProteinID:
XP_016117570
LinkDB
All DBs
Position
Unknown
AA seq
403 aa
AA seq
DB search
MKIDEKKCWSWFRCEKDLSPSHRYITKAFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQ
GFDFNKVFRSGIPYLTQEEESQLREQYEERRSQINGAGPVSYTPTSGTGVCKVPEDQRDF
IRTVEQKVEALLKNSDQTLDLEPCTGFQRKLIYQTLNSKYPKGLHVETLETEKKERFIQI
SKVDEEERRRREQQKQQREQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFC
GPLPEELGDFKEVAMSVFPRLLDTKLMASTQPFKEIISNTSLAELHKQLREKPFRSPTTG
NTFTHTLIQTHSDSNLCTHERFNFVCVTGSCSQTYADVTGTCDWPRLQPDEGGASVSPVQ
EEAEPEESSANQSQGKRSRRHKKRKSDASETTPPALFDVPQVW
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgatgagaaaaagtgttggagctggtttagatgtgaaaaagatctgtctccg
tctcacaggtacatcactaaagccttcaacttctacatcttccccaaacccttcagccgc
acgtctccagacatcaagttcatctgtcagagctccagcattgatttcctggccagtcag
ggcttcgacttcaacaaggtcttccgcagcgggatcccgtacctgacgcaggaggaggag
tctcagctgagggagcagtatgaggagaggcggagccagatcaatggggcggggcctgtc
tcgtacacgcccacctcggggacaggtgtctgtaaggtgcctgaagaccagagagacttc
atccggacggtggagcagaaggttgaagctcttctgaagaactccgatcagactctggat
ctggagccctgcaccggctttcagaggaagctcatctatcagacgctcaactccaagtat
cctaaaggtcttcacgtggagacgctggagacagagaagaaggagcggttcattcagatc
agtaaggtggatgaagaggagaggaggaggagagagcagcagaagcagcagagggagcag
gaggagctgaatgacgctgtgggcttctccagggttatcagagccatctctaaatctggt
aaactggtcgttggtcacaacatgctgctggacgtcatgcacaccatccatcagttctgt
gggccgctgcctgaggagctgggtgactttaaggaggtggccatgtctgtgtttcccagg
ttgttagacaccaagctgatggcgtccacacagcccttcaaggagatcatcagcaacaca
tcactggctgaactgcacaaacagctgagagagaaacccttcagatcacccaccactggt
aacacattcacacacactctcatacaaacacattcagactcaaacttgtgcacacatgag
aggtttaatttcgtttgtgtcacaggaagctgctcgcagacgtacgccgatgtgactggc
acctgtgattggcccagactgcagcctgatgaaggcggagcctctgtgagtccagtgcag
gaggaggcggagcctgaggagtcctcagccaatcagagtcaaggtaaaaggagccgcaga
cacaagaagaggaagtcagacgcttctgaaactacgccaccggcgctcttcgacgttcct
caggtttggtag
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