Sinocyclocheilus grahami (golden-line barbel): 107580898
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Entry
107580898 CDS
T04918
Name
(RefSeq) fibril-forming collagen alpha chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107580898
04518 Integrin signaling
107580898
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107580898
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107580898
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107580898
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Gar1
Motif
Other DBs
NCBI-GeneID:
107580898
NCBI-ProteinID:
XP_016122001
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MENSSTEKQVKNVLIPYNQDQESEKEKMELDINNTFQTKMTGDQSFCPELGPTDKPCTSG
QSEQLGDQSSSGQLEPTAEPFTTDQSGLTGEQSSSGQLGPTAEPFTTDQSGLTGEQSSSG
QLGPTAEPFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTD
QSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSG
QLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTD
QSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSG
QLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTD
QSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSG
QLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTD
QSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSG
QLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTD
QSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSG
QLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAELFTTD
QSGLTGEQSSSGQLGPTAELFTTDQSGLTGEQSSSGQLGPTAEPFTTDQSGLTGEQSSSG
QLGPTAEPFTTDQSGLTGEQSSSGQLGPTAEAFTNDQSEETGDQSTGGSSGLTEDHCTST
HSEQTGDQSSSGQFGPTGEHLTSDQSGLAGDQIFIIQSEQTLDQISSIQTGPAETQCGTL
VSPHSGTGSLGLLSMQYKENSSDDNCSDSDSDSSSSTSSSSSSSTSSSSEPFNLVKNNAE
DDDEGVAMGNEKRPAPLKTQDELLIDDLPVVENLFISLPEDTELEPIGTISSIVEQLVIV
ESYRNTPPLHENSVLFTKNRNSVGKIFEVFGPVCQPYYALRFNSHDDIDQKDLKIRDVVY
FAPKIKDFTDYIFTERLQRTKGSDASWKNDQEPPPEALDFSDDEQERLAKQKLKEQKRRQ
QNDSDSEDELDAHKGPPPHKSGRRKPRQNRNVSRGQHHDRGGGFHSNYHAHPPFPPEYMF
PPPDPHMFPFQGPMMPPFPRPPPFHMGMALWPPGPNQGFMFQPPPPPPPPPHNQ
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcaagcacagagaagcaggtaaagaatgttctaattccttacaatcaagat
caagaatctgaaaaagagaaaatggaattggatattaataatacgtttcagactaaaatg
accggtgatcagagcttttgtcctgaacttggaccaacagataagccatgcaccagtggt
cagtctgaacagctaggagatcagagctccagtggtcaacttgaaccaacagcagaacct
ttcactactgatcagtctggactgacaggagaacagagctccagtggtcaacttggacca
acagcagaacctttcactactgatcagtctggactgacaggagaacagagctccagtggt
caacttggaccaacagcagaacctttcactactgatcagtctggactgacaggagaacag
agctccagtggtcaacttggaccaacagcagaacttttcactactgatcagtctggactg
acaggagaacagagctccagtggtcaacttggaccaacagcagaacttttcactactgat
cagtctggactgacaggagaacagagctccagtggtcaacttggaccaacagcagaactt
ttcactactgatcagtctggactgacaggagaacagagctccagtggtcaacttggacca
acagcagaacttttcactactgatcagtctggactgacaggagaacagagctccagtggt
caacttggaccaacagcagaacttttcactactgatcagtctggactgacaggagaacag
agctccagtggtcaacttggaccaacagcagaacttttcactactgatcagtctggactg
acaggagaacagagctccagtggtcaacttggaccaacagcagaacttttcactactgat
cagtctggactgacaggagaacagagctccagtggtcaacttggaccaacagcagaactt
ttcactactgatcagtctggactgacaggagaacagagctccagtggtcaacttggacca
acagcagaacttttcactactgatcagtctggactgacaggagaacagagctccagtggt
caacttggaccaacagcagaacttttcactactgatcagtctggactgacaggagaacag
agctccagtggtcaacttggaccaacagcagaacttttcactactgatcagtctggactg
acaggagaacagagctccagtggtcaacttggaccaacagcagaacttttcactactgat
cagtctggactgacaggagaacagagctccagtggtcaacttggaccaacagcagaactt
ttcactactgatcagtctggactgacaggagaacagagctccagtggtcaacttggacca
acagcagaacttttcactactgatcagtctggactgacaggagaacagagctccagtggt
caacttggaccaacagcagaacttttcactactgatcagtctggactgacaggagaacag
agctccagtggtcaacttggaccaacagcagaacttttcactactgatcagtctggactg
acaggagaacagagctccagtggtcaacttggaccaacagcagaacttttcactactgat
cagtctggactgacaggagaacagagctccagtggtcaacttggaccaacagcagaactt
ttcactactgatcagtctggactgacaggagaacagagctccagtggtcaacttggacca
acagcagaacttttcactactgatcagtctggactgacaggagaacagagctccagtggt
caacttggaccaacagcagaacttttcactactgatcagtctggactgacaggagaacag
agctccagtggtcaacttggaccaacagcagaacttttcactactgatcagtctggactg
acaggagaacagagctccagtggtcaacttggaccaacagcagaacttttcactactgat
cagtctggactgacaggagaacagagctccagtggtcaacttggaccaacagcagaactt
ttcactactgatcagtctggactgacaggagaacagagctccagtggtcaacttggacca
acagcagaacttttcactactgatcagtctggactgacaggagaacagagctccagtggt
caacttggaccaacagcagaacttttcactactgatcagtctggactgacaggagaacag
agctccagtggtcaacttggaccaacagcagaacttttcactactgatcagtctggactg
acaggagaacagagctccagtggtcaacttggaccaacagcagaacttttcactactgat
cagtctggactgacaggagaacagagctccagtggtcaacttggaccaacagcagaactt
ttcactactgatcagtctggactgacaggagaacagagctccagtggtcaacttggacca
acagcagaacctttcactactgatcagtctggactgacaggagaacagagctccagtggt
caacttggaccaacagcagaacctttcactactgatcagtctggactgacaggagaacag
agctccagtggtcaacttggaccaacagcagaagcattcaccaatgatcagtctgaagag
acaggagatcagagcactggtggttcatctggactgacagaagatcactgcaccagcact
cattctgaacaaactggagatcagagctccagtggtcaatttgggccaacaggagaacat
ttaaccagcgatcagtctggactggcaggagatcagatcttcattattcagtctgaacaa
acattggatcagatctccagcattcagactggacctgcagagacgcagtgtggaactctg
gttagtccacactctgggactggatcgttaggtctgctgagcatgcagtacaaagaaaac
agctcggatgacaactgttcagacagtgactcagactcttcgtcctccacatcctcctct
tcatcatcctcaacctcttcctcctctgagccttttaatttagtcaagaacaacgcagaa
gatgacgatgaaggtgttgccatgggcaatgagaaaaggcctgcaccattgaaaacccaa
gatgagctgcttatcgatgatcttcctgtagttgagaacctcttcatcagccttccagaa
gatacagagttggagcccattgggacaatatcaagcattgtggagcaattagtgattgtg
gagtcatacaggaacacaccaccactgcatgaaaacagcgtgttattcaccaaaaacaga
aactctgttggcaagatctttgaagtcttcgggccagtttgtcagccttactatgctttg
aggttcaactcccatgacgatatcgaccagaaagatcttaaaattcgagatgtggtttat
tttgcccccaaaattaaagatttcacagactacatctttacagagcgactccaaaggacc
aaaggctcagatgcatcctggaaaaatgaccaggaaccaccccctgaggcacttgatttt
agcgatgatgagcaagagaggctggccaaacagaagcttaaagagcaaaagagacggcaa
caaaatgattccgactcagaggacgaattggatgcccataaaggtccgccccctcataaa
tccggtcggcggaagcccagacagaaccgcaacgtttcccgtgggcagcaccacgatcgc
ggtggcggtttccatagcaactatcacgctcacccccccttcccaccggaatacatgttc
ccccctccagatccacacatgtttcccttccagggcccaatgatgccaccttttcccaga
ccgccaccctttcacatgggaatggccctgtggcccccagggcccaatcagggctttatg
ttccagcccccacctccacctcctccaccaccgcataatcagtaa
DBGET
integrated database retrieval system
