KEGG   Sinocyclocheilus grahami (golden-line barbel): 107583000
Entry
107583000         CDS       T04918                                 
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03013  Nucleocytoplasmic transport
sgh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107583000
  09122 Translation
   03013 Nucleocytoplasmic transport
    107583000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sgh03019]
    107583000
   03041 Spliceosome [BR:sgh03041]
    107583000
Messenger RNA biogenesis [BR:sgh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     107583000
Spliceosome [BR:sgh03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107583000
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_TEP1_2nd WD40_Prp19 Beta-prop_EML WD40_CDC20-Fz Beta-prop_NOL10_N WDR55 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd ANAPC4_WD40 CFAP251_N WD40_Gbeta TRM82_WD WD40_MABP1-WDR62_2nd WDR54 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd DSE1_N Beta-prop_IP5PC_F EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_IFT140_1st ASA1 Beta-prop_ACSF4 Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd WD40_like Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_WDR75_1st
Other DBs
NCBI-GeneID: 107583000
NCBI-ProteinID: XP_016124544
LinkDB
Position
Unknown
AA seq 323 aa
MGPVELLHMSVFSQSFSPCGRFLAAGNNYGEIAVFSLSAALSPDASEGSQKPILNFTAHD
GPVFTLLSTDTHLLSAGNGEIRAWSWAELIKKSTKAAWTRKPSYETSLEIPEINAMIINP
KDNSLVVGGGDNNIHIMDMETGIFKSVLKGHTDYIHCLCFKEREGEILSGGEDGAVRIWD
SRTNRPVHCIEVFRYEECAXPQFGKWISCLATDSDWMLCGGGPSLSLWHLRSMSPTSVFP
LPGCQREAVFHQDLIMSVGEGPYVSHCLHGGTVKAQIPCTPSSLNTLALNLKNTEHRVMT
VGGSSHQIDVFTNFSYRAFSLSF
NT seq 972 nt   +upstreamnt  +downstreamnt
atgggtccagttgagctgctgcatatgtccgtgttctctcagagtttctctccctgcggg
cgtttccttgcagcgggtaacaactatggagagatcgcggtgttcagtctttcagctgca
ctgagtccagatgcatcagaggggagccagaagcccatccttaacttcactgctcatgat
ggtccggtgttcactcttctctccacggacactcatctcctgagtgctgggaacggagag
atccgtgcctggagttgggcagagctcatcaaaaaaagcaccaaagctgcatggacaagg
aaacccagttatgagactagtcttgaaataccagagatcaatgcaatgatcattaaccca
aaggacaacagcttggtagttggaggaggtgacaataacattcacatcatggacatggaa
actggcatctttaagtctgtactgaagggccacactgactacatccactgcctgtgcttt
aaagaaagggaaggggagatcctctctggtggggaggatggtgctgtgaggatatgggac
tcacggacaaatcgcccagttcactgtattgaagttttcagatacgaggaatgcgcantg
ccccagtttgggaagtggattagctgtcttgctacggactctgattggatgctctgtggt
ggaggcccatcgctctcattatggcacctccgttccatgtcccccacctctgtcttccct
ttgcccggctgtcaaagggaagctgtctttcaccaggacctgatcatgtcagtaggtgag
ggtccatatgtgtcccactgtttacatggaggaacagtgaaagctcagattccctgcact
ccttcctcactcaatacactggctctcaatctcaaaaacactgaacatagggttatgaca
gtagggggcagcagtcaccaaattgatgtgttcaccaacttcagttacagagccttttct
ctgtcattttga

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