Sinocyclocheilus grahami (golden-line barbel): 107583258
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Entry
107583258 CDS
T04918
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107583258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgh03041
]
107583258
03009 Ribosome biogenesis [BR:
sgh03009
]
107583258
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107583258
Spliceosome [BR:
sgh03041
]
Complex A
U1 snRNP components
U1 related factors
107583258
Complex B
107583258
Ribosome biogenesis [BR:
sgh03009
]
Eukaryotic type
Pre-60S particles
Helicases
107583258
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
BNIP2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107583258
NCBI-ProteinID:
XP_016124897
UniProt:
A0A672M5R8
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MPGYSDRDRGRDRGSYSSGPPRFGGSRGGPPQGKKFGNPGERLRKKHWNLDELPKFEKNF
YQEHPEVARRSPQDVEHYRRSKEITVKGRDCPKPIVKFHEANFPNYVMDVISKQNWTDPT
PIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTN
LGRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKKRCDDLT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDR
GGRSRGGRGGGFRDDRRDRHSGGRRDFNSYGQDNRNGDSYGQKKVFGNKTQNGSSGYNSG
TSSSFSGGYSNNGQGNFGNQSGGYGNQGYQNQQFAPNQGAVQNGMNHPPPFPFNPQQMPQ
SIPFPMAPPAFPQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcctggctattcagacagagaccgcggtcgtgacagaggtagttacagcagtggtccc
ccacgctttggaggcagcagaggtgggcctcctcagggcaagaagtttgggaatcccggt
gagcgtctgcggaaaaaacactggaacctggatgagctccccaagtttgagaagaacttc
taccaggagcatcctgaagttgctcggaggtcacctcaagatgttgaacactacaggaga
agcaaggagatcacggtgaagggtcgagactgtcccaaacccattgtgaagttccatgaa
gcgaactttccaaattacgtgatggatgtgatcagtaaacagaactggactgatccaact
cccatccaagctcaggggtggccagttgcactgagtggcaaagatatggttggcattgca
cagaccggctctggaaaaacgctctcgtatctgcttcctgctattgttcacataaaccac
caaccattcctggagcgtggagatggtccaatttgcttggtgttggctcccacccgtgaa
ttggcacagcaggtccagcaggtggcggcagagtacggcaaagcttctcgtctcaagtca
acctgcatctatggaggtgctcccaaaggaccacagatccgggacctggaaaggggtgtc
gagatttgtatcgccacacccggaagacttatcgatttccttgaagctggaaagacaaat
ctgggcagatgcacatatcttgtgcttgacgaagctgacaggatgcttgacatggggttt
gaacctcagattcgaaaaatcttggaccaaattagaccggaccgacagactctcatgtgg
agcgctacgtggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgta
cagatcaacgtcggtgctctgcagctcagcgccaaccacaacatcctacagattgtcgac
gtttgcaatgacggcgaaaaggaagacaaactgatgcgcctgctggaggaaatcatgagt
gagaaggagaacaagaccattatttttgtggagaccaagaaaaggtgtgacgatctcacc
aggaggatgcgtagggatgggtggccagcaatgggcatccatggagacaagagccagcag
gaaagagactgggtgctcaatgaattcaaatacggcaaagcgcccatcctcattgccaca
gatgttgcctccagaggactagatgtggaggacgtcaaatttgtcattaactatgactac
cccaacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaacc
ggcactgcctacactttctttacgcccaacaacatgaaacaggctcacgacctcgtctcg
gtcctccgtgaggccaaccaagccataaaccccaagctcatccaaatggccgaagacaga
ggaggtcgttcaaggggaggtcgaggtggagggtttagggatgaccgtcgggatcgccac
tctggcggcaggcgggacttcaacagctacggccaggacaaccgcaacggtgactcttac
gggcagaagaaggtgtttggaaacaaaactcaaaacggatctagcggttacaatagcggc
accagtagcagctttagcgggggttacagcaataacggacagggtaacttcggcaatcag
tctggtgggtacggaaaccaaggttatcagaaccagcagtttgctcccaaccaaggggct
gtccagaacggcatgaaccaccctccaccgttccccttcaacccccaacagatgccacag
tccattccgttccccatggccccacctgcgttccctcagtaa
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