Sinocyclocheilus grahami (golden-line barbel): 107583628
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Entry
107583628 CDS
T04918
Name
(RefSeq) endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sgh03036
]
107583628
Chromosome and associated proteins [BR:
sgh03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107583628
microRNA pathway
RISC loading complex
107583628
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
PAZ
DEAD
Helicase_C
ResIII
Cas3-like_C_2
dsrm
Motif
Other DBs
NCBI-GeneID:
107583628
NCBI-ProteinID:
XP_016125401
LinkDB
All DBs
Position
Unknown
AA seq
1859 aa
AA seq
DB search
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLIKELSHQIRGEYGKRTVFLVNAASSVVQQASTVRTHSDLQVGDYMSEDMTSWP
EEMWNREMIENQVLVMTCHIFLHVLKNGVLPLSKINLLIFDECHLAITDHPYGEIMKICE
GCPGCPRILGLTASILNGKCDPCDLEEKIQNLEKILQSNAETATDLVVLDRYASQPREVV
LDCGLYQDQSGLSERLLSELDEALHFLNDCNLSAHREDRDPTFISKQVLNDCRAVLTVLG
PWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVT
PKVIKLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEAEAKEKPEANF
PSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQM
EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRAR
APVSNYIMLADSERTKTFEEDLKTYKAIEKILRNKCSKSAERSEFELEPVTDDDNVLPPY
VLRSEDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCKTVELKTGGYQSTLFLPINSP
LRVPVTGPTMNCARLAEKAVALLCCEKLHKNGELDDHLMPVGKETVKYEEELDLHDEEET
NVPGRPGSTKRRQCYPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYP
PEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLSAEQLELITRLHQYIF
SHILRLEKPALEFKPVEADSAYCVLPLNIVENSNTLDLDFKFMEDIEKSEARIGIPTTQY
TKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKT
KYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILV
PELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNL
DFGWKKSIDSKSFISCPSACMEDDDHCKHSTSSDSDHTALEGCSTEASQPPEGALPCENC
NTPDEKLETHMLPATDLQTPNKDKSNCVCSRNLPNGTRGDSDDLPHRHDICQCSQLGPLE
SDLSTQTTTSVPVRPSPAGEPQPQPSDECIPGRNSDICDGHVKKPTSNCCPKPEPATSTT
APSEMSSEVSDVTSTSACTGPAWDSPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDS
FLKHAITTYLFCTYPDAHEGRLSYMRSKKDMCREPSKKNGKNSASGFYQPSPWFRQRLAN
KDLANGKASDDEDEEAEAEDVEVKASKEEVSVEDELDYFYEHIRFIDNMLIGSGAFGKKI
SLQPAEPGYEWKAPKKAHNSHFSPDGGADEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNP
SEENCGTDIGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV
LPVMKQSSGGSAELQYGWLKIPPRCMFDHPDAEWTLNHLISGFENFEKKINYTFKNKAYL
LQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNT
IFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIE
VPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPE
TAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atggctggcctacagctggtgacccctgcctcctcacccatggggcccttcttcggtctc
ccgtggcaacaggaagctatccatgacaacatatacacaccaaggaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactatagtctgcttaaatactggctcagggaag
acctttatcgcagtactcctaatcaaagaactctcccaccaaatccgtggagagtatggg
aagagaacagttttcctggtgaatgcagcatcatctgtggttcagcaagcatctactgta
agaacccactcggatctccaggtaggcgattacatgtcagaagacatgacatcctggccc
gaggagatgtggaacagagagatgatagagaatcaggtgctggtcatgacgtgccacatc
ttcctgcatgtgttaaaaaatggagtcttgccactatcaaaaatcaacctgctgattttt
gatgaatgccaccttgcaatcacagaccatccttatggggaaataatgaagatttgtgag
ggttgcccaggttgtcctcgcattttgggtctgactgcttccattttaaatggcaaatgt
gacccttgtgatctggaggagaagattcagaacctggagaagattctgcagagcaatgca
gaaactgccactgatcttgtggtgcttgataggtatgcgtcccagcctcgtgaggttgtg
ctggactgtgggctatatcaggatcagagtgggctctctgagaggcttttgagtgagctg
gatgaagcccttcattttcttaatgactgcaacttatctgctcatcgagaagatagagat
cccacattcatctccaaacaggtgctgaatgactgtcgtgccgtgttaactgtgctgggc
ccttggtgtgccgataaagctgctggaatcatggtccgggagctgcagaaatatatcaaa
catgaacaggaagagctgaaccgcaagttcctgttgttcacagacaccattctgagaaaa
atccacgctttatgtgaggagcatttctctccagcttccctagacctgaagtttgtcact
cccaaggtcattaaacttctggagattctccacgagtacaagcctttcgaacggcagcag
tttgagagtgtggagtggtacaataatcgcaatcaggacaattatgtttcttggagtgat
tctgaggacgaagatgaggatgaagaggcggaggcaaaggagaagcccgaagctaatttt
ccgtcgcctttcaccaacatcctctgtggaatcatctttgtggaaaggcggtatacagcg
gttgttttaaacaggcttatcaaggaggcagggaagcaggacccagagctggcctacatc
agtagcaacttcatcacaggtcacagcatcggcaagaaccagcctcgcaacaaacaaatg
gaggtggagttcagaaagcaagaggaggtcctgaggaagttcagagcccatgaaaccaac
ttgctcattgcaaccagcattgtggaagaaggcgttgatattccaaagtgcaatttggtc
gttcggtttgacctgccaacagagtaccggtcatacgtgcaatccaaaggtcgcgcccgg
gctccagtctccaattacatcatgctagctgacagcgaacggacaaaaacatttgaagaa
gacctcaagacctacaaggccatagagaagatcctccgaaataagtgctcaaagtcagca
gaacgcagtgagtttgaactggagccggtgaccgatgatgacaacgttctaccaccttac
gtcctgcgctcagaggacggcggcccacgtgtcacgattaacacagccattgggcacgtc
aacagatattgtgcgcgtttgcccagtgatccgttcactcatcttgctccgaagtgtaaa
actgtggagctgaagactggaggttatcaatccacactcttcctacccattaactcacca
ctcagagttcctgtcaccgggccaacaatgaattgtgcaagacttgcagagaaagctgtc
gctcttctttgttgtgaaaagctgcacaaaaatggtgaactggatgatcatttgatgcca
gtgggaaaggaaactgtaaagtatgaggaggagttggacctgcacgatgaagaggagacg
aatgtgccaggaagaccaggctccaccaaacggagacagtgttacccaaaagccatacca
gagtgtctgcggggttgttaccctgtgccagagcagccttgctacctttacgtcataggg
atggtcctcaccacccctcttcctgatgagctcaacttccggcggaggaagctgtaccca
ccggaggacactactcgatgttttggcattctgacagctaaaccaatacctcggatccct
cacttccctgtgtatacacgttctggcgaggtgaccatttcaattgagctgcagaagtcg
ggcttcactctgagcgcggagcagctggagctgatcacacgtctgcaccagtacatcttc
tcccacatcctccgtctggaaaagccagcactggagtttaagccggtagaggcagattct
gcctactgcgttctacctctcaacattgttgagaattccaatacgttggacctggatttc
aagttcatggaggatattgaaaagtctgaagcacgcattggcattccaactactcagtac
accaagcaaaacccattcattttcaaattggaggactaccaggatgctgtcatcattcca
aggtatcgtaattttgaccagccacatcggttctacgtggctgacgtttacacagacctc
accccgctcagtaaattcccttctccagagtacgagactttcgccgagtactacaaaacc
aagtacaacctggacctgtctaatgttaaccagcccctactggatgtggaccacacatct
tcaagattgaatcttttaactccccggcaccttaatcaaaaggggaaagcccttcctctc
agcagtgcagagaagagaaaggccaagtgggaaagtctacaaaacaaacagattttagtt
ccagagctctgtgccattcaccccatcccagcctctttgtggaggaaagccgtctgcctt
cccagcattctctacagacttcactgccttctgacggccgaagagctgcggtctcagaca
gccattgacgctggtgtaggggctcagaccctgcctcctgatttcaggtatccaaatttg
gatttcggatggaagaaatccatcgacagcaagtctttcatttcctgccccagtgcatgt
atggaagacgacgatcactgtaaacacagcacaagctcagattcagaccacactgccctg
gagggctgcagcacggaggcctcccagcctccagagggcgctctcccctgtgagaactgc
aacacaccagatgaaaagctagaaacccacatgctccctgcgactgatctccagacaccg
aacaaagacaagagcaactgcgtttgttcccgaaacctccctaacggcactcggggtgac
agcgacgaccttccacatagacatgacatttgccaatgctctcagctgggccctctggag
agtgacctatcaacacaaaccactacctcagttcctgtgcggccctccccagccggcgag
ccacagccccagcccagcgatgaatgtatcccaggcaggaactcagatatctgtgacgga
catgtgaaaaaacctacctcaaactgttgccccaaaccagagccggcaaccagcaccaca
gcaccttcagaaatgtcatcagaggtctctgacgtgacatctacatcagcctgcacaggt
ccagcctgggattctcccaaaaccttaggccccaaccccggcctcatcttgcaggccctg
accctctccaatgccagtgacggcttcaatctggagaggttggagatgttgggcgactct
ttcctgaaacacgccatcaccacctacctgttctgcacttaccctgacgcccacgagggc
aggctgtcatacatgagaagcaagaaggacatgtgcagagaaccaagtaagaaaaatgga
aagaactctgcttctggtttctaccagccctctccatggtttcgacagagactggctaat
aaagatttggccaacggaaaagccagtgatgatgaggatgaagaggcagaggcagaggat
gtggaggtcaaggcatctaaagaagaggtcagtgtggaagatgagctggattacttctat
gagcacatcagattcatcgataacatgctgattggctccggcgccttcgggaagaagatc
tccctccagccggccgagcccggctacgagtggaaagctcccaaaaaagcccacaactcc
cacttttccccagacggcggcgctgacgagttcgattacagttcctgggacgccatgtgc
tacctggaccccagcaaagctggcgaggaggatgacttcgtggtgggcttctggaacccc
tccgaggaaaactgtggcacggatattgggaagcagtccatctcctacgacctccacacc
gagcagtgcatcgccgataagagcatagccgactgtgtggaggccctgctggggtgctac
ctcaccagctgtggggagagggcggcccagctgttcctgtgctccctcggcctgaaggtg
ctcccggtgatgaagcagagttcaggggggtcggccgagctgcagtacggctggctgaag
atccctccgcgctgcatgtttgatcacccggatgccgagtggacgctcaaccacctcatc
tctggcttcgagaactttgagaagaagataaactacacgtttaaaaacaaggcatatctt
ctgcaggctttcactcacgcctcgtatcattacaacaccatcacagattgttatcagcgg
ttggagttccttggtgatgcaattttagactacctcataacaaagcacctttatgaagat
ccccggcagcactccccaggcgtgctgaccgacctgcgctctgcacttgtcaacaacacc
atatttgcttccctggctgtcaagtacgattaccacaagtacttcaaagctgtctcgccc
gaactgttccacgtgatcgatgattttgtgcaatttcagctggagaagaacgaaatgcaa
ggaatggattcggagcttcgccgatcggaggaagacgaggagaaggaggaagacattgag
gtccccaaagcaatgggagacatctttgaatcgctagctggtgcaatttacatggatagc
gggatgtcacttgaaacagtttggcaagtgtattatccaatgatgaggccgctcatagaa
aagttctccgctaatgtccctcgatccccagtgcgtgaactcctggagatggaaccggag
acggcaaaattcagccctgcagagagaacctacgatggaaaagtacgggtgacggtggaa
gtggtgggcaaaggcaagttcaaaggcgtgggacgcagctaccgtatagccaagtcagcg
gccgcccgccgagccctccgcagtctcaaagccaatcaacctcaggtccaaaacaactga
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integrated database retrieval system
