Sinocyclocheilus grahami (golden-line barbel): 107584150
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Entry
107584150 CDS
T04918
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sgh04147
]
107584150
00535 Proteoglycans [BR:
sgh00535
]
107584150
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107584150
Exosome [BR:
sgh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107584150
Proteoglycans [BR:
sgh00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107584150
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107584150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
107584150
NCBI-ProteinID:
XP_016126115
LinkDB
All DBs
Position
Unknown
AA seq
1464 aa
AA seq
DB search
MARRWVAFLERFLCCLFIALSPAAAQRREESGVSLLQLIGDPPPDGVSKVFDHDNSPGYV
FDQSSNVGQSAAAHLPNPFFRDFSLIFNIKPTSSKPGVIFSITDPTQNIMYVGVKLSAVE
KGKQYIIFYYTEPDSQSSYEAARFSVPSMVNTWTRFSICVLNERVSLYFSCDSDPQVIPF
ERSPDDMDLDAGAGVFVGHASGADPDKFLGFIGDIRVLKDPGAAERHCEEDEDDFDANLQ
GSGDYGASGDGEGRPSIQPSPPSSRPIQQPPVSSRPLVEKQLTGSVDSSWQTSGSYGDSR
QTSGSYGGSQKTSGPYGDSRRTSISYGDSRQTSGSYGGSQQSSGSYGDSRQTLDLIDVSR
QTSGLYEDSRQASNSLSTSGSAGDGIRYSVESRLGSAGPTGAKGEKGDRGETGAKGERGL
VGTKGDSGSGSGSGGSANGEKGDAGEKGVKGSSGFGYPGSKGDRGHPGPPGPPGPPGPSA
EVDVRGDGSVVQRVTGPRGPPGPAGPPGPAGAEGEPGDPGEDGKTGQVGPPGFPGTPGSS
GPKGEKGEQGESQPGPRGPPGLPGPPGPPSRSDRPTFVDMEGSGFDLDSVRAMPGLPGLP
GPPGPPGLPGPPGPGSSGSGGLGPPGPPGQNGAPGQLGLPGPPGADGKPGSMGPKGEKGD
DGELGLPGPVGEKGAKGSSGSPGLPGEGGLAGLPGPMGPVGQPGPPGPPGPSYHVGFDDM
EGSGVHFSSVPGVRGPVGIQGPPGAPGPHGKPGFPGFPGVKGSEGPQGKDGQPGLDGFPG
PQGPTGNKGDRGDRGEPGRDGAGLLGPPGPPGPPGQIIYRYTENNEETGGAGPQGGAGLP
GQAGFPGPMGPKGDRGEPGSPGYGIKGEKGEPGLILGPDGNPLYLGGLASHKGESGLPGP
VGPLGPAGPPGLKGEFGMPGRPGRPGVNGYKGEKGEPGSGSGSGSGFAYTGPPGPPGPPG
PPGPAVPLDRFGRNEDYSRQYPAMKGEKGDQGAPGVPGSPGFSSNFDIYALKNEMKGEHG
ESGLKGEKGEPGGGFYDPRFGAVQGPPGNPGPTGPKGDSIRGPPGPQGPPGPPGVGYDGR
PGNPGPPGLPGPPGSPSLPGAYRPQLSIPGPPGPPGPPGVPGTGSGQVIFLRSYDIMMAT
ARRQSEGALIYILDRNDLYLRVRDGVRQVMLGENKPFYGELDNEVAAVQPPPVVHYSQDH
TADNGAEQISPPHQPIEFPRREPENRNPSPPDSRYPDPRYPPYTDNRYIDPVQPHKYPVQ
PERNPITPARRPSPPVSQPEGHTHTSGPGLHLIALNSAQVGNMRGIRGADFLCFQQARAV
GLKGTFRAFLSSKLQDLYSIVRKSDRETLPIVNLKDQVLFRSWESLFSDSESRMKDNAPI
YSFDGRDVLRDSAWPEKMIWHGSSDRGHRQTDNYCETWRAGDRAVTGLASSLQAGQLLQQ
TSSSCSSSYIVLCIENSYMTQSKK
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaggtgggtcgcgtttctagagcggttcctctgctgcttgttcatcgctctg
tcaccggctgcagcgcagaggagagaagaaagtggagtgtcgctgttgcaattaattggt
gatcctccacctgatggcgtctccaaagtctttgaccatgataacagccctggctatgtg
tttgaccaaagctccaatgtgggtcagtcagctgcggcccacctgcccaaccctttcttc
cgtgacttctcccttatcttcaacataaaacccacgtcctccaagcctggagtcatcttc
tccatcactgacccaacccagaacatcatgtatgttggtgtgaagctgtcagcggtggag
aagggcaagcagtatatcatcttctactacactgagccagactcgcagagctcatacgag
gcggccagattttccgtgccttccatggtgaacacctggacccggttttccatctgtgtt
ttgaatgagcgtgtttccctctacttcagctgtgactcagatcctcaggtcatccctttt
gagcggtctccagatgatatggacctggatgccggggctggagtgtttgttggtcatgcc
agtggagcagaccctgataagtttttgggttttatcggcgatataagggtgttgaaagac
cctggggcggctgaacggcactgtgaagaagatgaggatgacttcgatgcgaatctacag
ggatcaggtgattacggagcaagtggagatggagaaggacgaccatcaatccagccgtct
cctccctcctctcggccgatccagcagccgccggtgagcagcagaccgcttgttgagaag
cagctgacaggctcagtcgattcctcttggcaaacttctgggtcctacggtgattctcga
caaacatctggctcatatggcggttctcaaaaaacatctggtccttatggggattcccga
agaacctctatctcctacggtgattcccggcaaacatctggctcatatggtggttctcaa
caaagttctggctcatatggtgactctcgacaaacgcttgacttaattgatgttagcagg
caaacttcagggttatatgaggattctagacaagcttcaaactctctaagtacgtcaggc
tcagctggtgatggcatacggtattctgtggagtccagactcggttctgcaggtccaaca
ggtgcaaaaggagagaaaggagacagaggagagacgggtgccaaaggtgagaggggtctt
gtggggacgaagggtgattcaggatctggatctggatctggtggcagtgcaaacggagag
aagggtgatgcaggagagaaaggagtgaagggtagttctggttttggttatcctggatca
aagggtgaccgtggccatcctgggcctccagggcctcctggtcccccagggcccagtgca
gaggtagacgtgagaggagatgggtcagttgtgcagagggtgacaggaccaagaggacca
cctggaccagcaggaccccctggccctgctggagctgaaggggagccgggtgaccctgga
gaagatggaaaaactggccaagttggacctcctggttttccaggaactcctgggagttct
ggacccaaaggagagaaaggagagcagggtgaaagtcagccaggacctcgagggcctcca
ggtcttcctggcccaccgggacccccatctcgctctgataggcctacatttgtggacatg
gagggttctggatttgatttggacagtgtgcgggcaatgcctggtttgcctggcctacct
ggtcctcctggtccccctggcctcccaggtccccccggtcctgggtcttcaggctctggt
ggtttggggcctcctggtcctcctgggcaaaatggagctccaggtcaactgggacttcca
ggtccaccaggtgctgatggaaaaccaggctcaatgggcccaaaaggagagaagggtgat
gacggtgagctgggcctacctggacctgtgggagagaagggtgccaaaggttcttctggt
tcccctggccttcctggagagggtggacttgctggtcttccaggaccaatgggacctgtt
ggacaaccagggccacctggtcctcctggcccaagctatcatgttggttttgatgatatg
gagggttctggtgttcacttcagttcagtccctggagtaagaggaccagtgggaatccag
ggacctcctggtgccccaggaccacacggtaagcctggtttcccaggatttcctggagtg
aaaggcagtgagggacctcagggaaaagatggccaacctggtttggatggcttccctgga
ccacagggaccaacgggcaacaagggagaccgaggcgacaggggtgaacctggtcgagat
ggagctggacttctaggtccacccggcccccctggaccacctggacaaattatttatcgt
tatactgaaaataatgaggaaactggaggagcagggcctcagggtggggctggtcttcct
ggtcaagcaggattcccaggcccaatgggaccaaagggtgaccgaggagaacctggttca
ccaggctacggcattaagggtgagaaaggagaacctggacttattcttggacctgatgga
aacccactttaccttggtggattggcaagccataagggtgagagtgggcttcctggacca
gtcggacctcttggtccagctggacctcctggattgaaaggtgaatttggaatgccaggc
agacctggtcgcccaggtgtaaatggatacaaaggagagaagggagaaccagggtcaggg
tcagggtcagggtctggatttgcctacacaggtccccctggtcccccagggcctcctggt
ccccctggacctgctgtgcctttggacagatttggtagaaatgaagattattcgagacag
tatccagctatgaaaggagagaaaggagaccagggagctcctggagttccagggtcgcca
ggtttttcctctaactttgatatctatgccctcaagaatgagatgaagggggagcacggt
gagtccggtcttaaaggagaaaaaggagagccaggaggaggattttatgaccctcgtttt
ggagctgtacagggaccaccaggaaaccctggacctactggacctaaaggagactcaatc
agaggtccccctggaccgcagggcccaccaggaccacctggagttggttatgatggtcgt
ccaggaaacccaggacctcctggactccccggtcctccagggtcaccgtcattgccagga
gcctacagaccacaactcagtattcccggacctccaggtcccccgggccctcctggagtt
cctggcactggatctggacaggtgattttcctgaggtcttatgacataatgatggctacg
gcacgcagacagtctgaaggtgctttgatttacattttggatagaaacgatctctacctc
agagttcgggatggtgtcagacaagtgatgcttggagaaaataaacccttctatggagag
ctggacaatgaagtggcagcggtccagccgccccctgttgttcactattcccaagaccac
acagctgacaatggagcagagcagatttctccaccgcaccaaccgatcgagtttccaagg
agggagccagagaatagaaaccccagtccgcctgactcccgttacccagatccacgatac
ccaccctacactgataacaggtacatcgaccctgtacaaccacataaataccccgttcaa
cctgagaggaaccccatcactccagcccgccgccctagcccccctgtcagtcaaccagag
ggccacacccacacttctggaccagggttgcatcttatcgcccttaattctgcacaagtg
ggcaacatgagaggcattcgtggggcagacttcctgtgcttccagcaggctcgggccgtg
ggcctgaagggaacgttcagagccttcctgtcttccaaacttcaggatctctatagtatc
gtccgcaaatctgacagagagacattaccgattgttaacctcaaggatcaagtccttttc
agaagctgggagtctctcttcagtgactcagagagcaggatgaaggacaatgctcctatc
tactcatttgatggcagagatgtcctgcgggacagtgcctggccagagaagatgatctgg
catgggtccagtgacaggggtcacaggcagacagataactactgtgagacgtggagggcc
ggagaccgtgcggtgacaggcttggcctcgtctctgcaggctggccaactcctccagcag
acctccagcagctgctccagttcctacattgtgctgtgcatcgagaacagctacatgaca
caatccaagaaataa
DBGET
integrated database retrieval system
