Sinocyclocheilus grahami (golden-line barbel): 107584302
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Entry
107584302 CDS
T04918
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03013
Nucleocytoplasmic transport
sgh03015
mRNA surveillance pathway
sgh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107584302
09122 Translation
03013 Nucleocytoplasmic transport
107584302
03015 mRNA surveillance pathway
107584302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107584302
03041 Spliceosome [BR:
sgh03041
]
107584302
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107584302
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107584302
Spliceosome [BR:
sgh03041
]
Complex C
Other components
EJC/TREX
107584302
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107584302
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107584302
NCBI-ProteinID:
XP_016126353
UniProt:
A0A672MW14
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MTENDVENELLDYEEDEVDAGGVGDTGLGHNDGGIAVRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgacgttgagaacgagctgttggactatgaggaggatgaggttgatgca
ggtggtgtcggggacacgggacttggacacaacgatggtggaatagccgtcaggaaagaa
ggggtcaaagggtcatatgtgtccatccactcctcaggattcagagatttccttctcaaa
ccagaactgctgagagctatagtggactgtggctttgaacatccatctgaagttcagcat
gaatgcattcctcaggcgatcctggggatggatgtattatgtcaggccaagtctggaatg
gggaagacggctgtctttgtgttggctacccttcagcagctggagccagtgaccgggcag
gtatcagtgttggttatgtgtcacacccgagagctggccttccagatcagcaaagagtac
gagcgcttctccaaatacatgcccagtgtcaaggtggcagtgttctttggtggcttatct
ataaagaaggacgaggaggttctgaagagagagagccctcatgtggtggtgggaactcct
ggacgcattctagctctgtctcgcaacaagagtctcaacctgcgacacatcaagcacttc
atcctggacgaatgtgacaagatgctggagcagcttgacatgcggcgtgatgtccaggag
atctttcgtatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaa
gagatccgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgac
gaaaccaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaagctctttgacctcctggacgtgttggagttcaatcaggtggtgatcttt
gtgaagtccgtgcagcgttgtattgctctggctcagttgctggtggagcaaaatttccct
gccattgccattcatagagcaatgcctcaagacgaaagattagctcgatatcagcagttc
aaggatttccagagacggatcctggtggccacaaacctgtttggccgaggtatggacatc
gaaagagtcaacatcgccttcaactacgacatgcctgaagattcagacacatacctgcac
agggttgcgagggccggcaggtttggaacgaaaggtctggccatcacctttgtgtcagat
gagactgacgcccgcactttgaacgatgttcaggacaggtttgaggtgaacatcagcgaa
cttccagaggagattgacatctcttcatacattgaacaaactcgataa
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