Sinocyclocheilus grahami (golden-line barbel): 107585244
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Entry
107585244 CDS
T04918
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K08135
collagen type XV alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sgh00535
]
107585244
Proteoglycans [BR:
sgh00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107585244
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
107585244
NCBI-ProteinID:
XP_016127659
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Position
Unknown
AA seq
1326 aa
AA seq
DB search
MAAPVLSLTCLVLLSLVSVSSQFQWFRFLWVPETTSSAPAVTTPVPTTTAPEESTAPVFP
ASPPQPTEGFSKARAKKPLRMWKSERGSKGHLVLTELVGVPLPPSVSFITGYEGFPAYNF
GPNANVGRLTQSFVPEPFFMDFAIIVTIKPSNSRGGVLFAITDPSQMIVHLGLALTPVED
KTQRIVLYYSEPGLADTMEVASFKVPDMTQQWYRFTLTVENEEVRLYMDCEEYHSAPLKR
SQQPLSFKQGSGIFVANAGSTGLERFVGSIQQLVIKPDPRAAEEQCEEDDPSLQASGDRS
GDGDYDEEEHGRHEVIFGQTNVREDKEKTYRPTYPVQAPPTVSPDMDEGEFSGHVTPIDE
RLLRGTYKTDETGESTGDSSGQGLKGERGEPGPAGPPGPPGSPGPSLPPTHSGQPGQRGP
QGPMGPPGRQGRPGKDGQPGHKGEEGKPGQRGPPGLPGLPGESGVKGEKGDSAVGLPGPP
GPPGPPNQSKPIKVPYGFDALGSGFEDVDIDTERLRGPPGPPGPPGKPGPPGPNGPLGAL
LPGPPGTPGKDGRDGQPGLRGLPGPDGLTGQQGPKGAKGEQGMRGPSGPKGENGDPGLIG
PMGPRGVPGPPGIPGPPGPPGPLSNDMMNTLKDLEGSGESGLFLGAGISKGYHGPPGIPG
PPGPQGLPGADGAPGLSVKGEAGSPGQDGIQGLAGLPGARGPKGDKGSPGEKGERGRDGL
SITGPPGPPGPPGPSINFQDLLLNDTAAKLNLTKIRGPPGPMGPEGLPGRAGFPGPRGPK
GEIGFPGIQGPPGLKGERGEPGVSIAADGSVIPGLRGPRGPKGMKGDIGPSGQPGIVGPI
GPPGQKGEYGLPGRPGRAGIAGRKGDKGDSSGPPGPPGPPGPPGPSGRVIGLNGTVFPVP
PRPHCKIPVNNNNSQQGNGRASLGVKGDKGDVGSPGLPGTAVPLFPHGYVGAKGNNGHKG
QNGEKGDPGLPGPPGLPGRTGLVGPKGDSIVGPPGDTGPPGHPGLPGYGIPGPQGPPGPP
GPAGTPSAYGSAVSLPGPQGPPGPPGAPGHGNPVRTYKNSQTLIRETSQAAEGTLAYVLD
KSELYIRVRGGWKKVELGELIPVPQDSSSSALSQGLSRPSDRSVPRVHSQELKSFLPDHV
FLQNAHSMPALHLVALNAPFTGDMHGIRGADYQCYQQARARGLTSTYRAFLSSHLQDLSS
IVKKGDRFGLPVVNLKGDALFGSWMAMFSGDGAVFDPLTPIYSFDGRNVMTDQAWPQKLV
WHGSNTAGIRMTTSYCEAWRTGDMAVTGQASLLQTGRLLGQHTRSCSNHFIVLCIENSYI
QNPGRN
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccggtgctgtcgctgacctgtctggtgctcctgagtctggtcagtgtctcc
tctcagttccagtggttcaggtttctatgggtcccagagacgacctcatctgctcctgct
gtcactacacctgtacccaccactacagcaccagaggagagcacagcccctgtcttccca
gcctcccctcctcagcccacagagggattcagcaaagccagagctaagaaacctctcaga
atgtggaagagtgagcgagggtccaagggtcacctagtcctgactgagctagttggtgtt
cctcttcctccatctgtgtccttcatcactggctacgagggtttccctgcttacaatttt
gggcctaatgctaatgtaggtcgactgacccaatcctttgtacctgagcccttcttcatg
gactttgccattattgtcaccatcaagccctccaactctcgaggaggggttctgttcgcc
atcacagatccctcccagatgatcgtccacttgggcttggcgctgacacctgtggaggat
aagacccagaggattgtactttattacagcgagccagggcttgcagacaccatggaggtg
gcttcctttaaagtgcctgatatgacacagcagtggtaccgctttacgctgacggtcgag
aacgaggaggttcggctctatatggattgtgaggagtaccacagcgcccccctgaagaga
agccagcagccccttagctttaagcaaggctcaggtatctttgtggcaaatgcgggcagt
actggcctggagagatttgtggggtctattcaacagctggtaataaaaccggaccctagg
gcagcggaagagcagtgtgaggaggatgaccccagcttgcaggcctccggggacagaagt
ggtgatggtgattatgatgaagaagaacatgggagacatgaagtaatcttcggtcagaca
aatgtgagagaagacaaagaaaagacatatagacccacatatcctgtccaagctccgccc
actgtgtcacctgacatggacgaaggggagttttcaggacatgtgaccccgatagacgaa
aggctgcttagagggacttataaaacagatgaaacaggggagagtacaggggatagttct
ggccaggggctaaaaggggagcgtggagaacctggacctgcaggccccccaggacccccc
ggatctcctggaccatctctcccacccacacattcaggtcaacctggacagagaggccct
caaggtccaatgggtccaccaggaagacaaggcagaccagggaaagatggacaacccgga
cacaaaggtgaagaaggaaaaccagggcagagaggacctccaggacttccaggattacct
ggagaatctggagtcaaaggagaaaagggtgattctgcagttggtctgcctggtccacca
gggcctcccggaccaccaaaccaatccaaaccaattaaagttccatatggatttgatgct
ctcggctctggatttgaagatgttgacattgatacagaacgtcttagaggtccacctggt
cctccagggcctccagggaaacctggccctcctggtcctaatggccccttaggggctttg
ctgcctggaccaccaggcacccctggcaaggatggcagagatgggcaacctggacttcgt
gggcttcctggtccggatggcttaactggacaacagggtcccaaaggagcaaagggtgaa
caaggaatgagagggccctctggacctaagggtgaaaatggtgaccctggccttattggt
cctatgggaccgaggggtgtacctggaccacctggcattcctggtcctcctggcccacca
ggacctttaagcaatgacatgatgaacactttgaaggatttggagggttctggtgaaagt
ggattgtttctcggagctggaatttcaaaaggctatcatgggcctcctggtatacctggc
ccaccaggacctcagggacttcctggtgctgatggagcccccggtttgtctgtaaagggt
gaagcaggatcgccaggacaggatggaatacaaggattagctggtttaccaggtgccagg
gggccaaagggggacaagggcagtccaggagagaagggtgagcgaggtcgtgatggactg
agcatcacagggcctcccggtccccctggcccgcctggaccgagcattaacttccaggat
ctccttcttaatgatactgcagccaaattgaacctcactaagatcagaggacctccaggc
cctatgggccctgaaggcttgcctggcagagcaggattccctggcccaagaggaccaaaa
ggtgaaattgggtttcctggcattcaaggacctccaggactgaagggagaaaggggggag
ccaggtgtatctatagctgctgatggctctgtaataccaggcctgagaggacccagagga
ccaaagggaatgaagggagatattggcccctctggacagcctgggattgtggggccgatt
ggaccacctgggcaaaaaggagaatatggacttcctggtcgaccaggcagggctggaata
gctggaaggaaaggagacaagggagattctagtggtccccctggtccaccgggtccacct
ggacctccagggccatcaggacgagtaattggtctcaatggaacagttttcccagttcct
cctagaccacactgcaaaataccagtcaacaacaacaattcacaacaaggcaatggaaga
gcatcattaggagtcaaaggggacaagggtgatgtgggaagtcctgggttgccaggaact
gcagtgcctttgtttcctcatggttatgtgggtgctaaaggtaataatggccacaagggg
caaaatggagaaaaaggggatccaggtttgcctggcccaccagggctgcctgggaggaca
ggccttgtgggaccgaaaggtgactctattgttggtcctcctggggacactggtcccccg
ggccatccaggactgcctggctatggaattccaggaccacaggggccaccaggacctcct
ggaccagcaggcactccatccgcatatggctctgctgtgagtctccctggacctcaaggt
cctccagggccgcctggtgcacctggccatggaaaccctgtgagaacatataaaaacagt
cagaccttgataagagagaccagtcaggctgcagaagggactctggcatatgttctagac
aagagtgaactgtatatcagggtacgagggggctggaagaaagttgagctaggagagcta
atcccagttcctcaagacagttcctcatctgctttgtcacaaggcctgagcagacccagc
gaccgcagtgtacctagagttcatagtcaggagttgaagagcttcctgccagaccatgtt
tttcttcagaatgcgcactcaatgccagcgttgcacctggtggcactcaatgctccgttc
acaggggacatgcatggaatccgaggggcagattatcagtgttaccagcaagcccgtgcc
aggggcctgacatccacttacagagctttcctctcctctcacctacaagacctttccagc
atcgtcaagaaaggggaccgcttcggcctgccagtggtgaacctcaaaggagatgcgctt
ttcggcagctggatggctatgttctctggcgacggggctgtttttgatccacttacaccg
atttattcctttgatggacgaaatgtcatgacagatcaagcttggcctcagaaactggtg
tggcatggctcgaataccgcgggcatccgaatgacaactagctactgtgaggcctggcgg
acgggtgacatggcggtgacgggacaggcgtctcttctgcagactggcagactgctgggg
cagcacacgcgtagctgctcaaaccacttcattgtgctttgcattgagaacagctacatc
cagaaccctggaaggaactag
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