Sinocyclocheilus grahami (golden-line barbel): 107585898
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Entry
107585898 CDS
T04918
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107585898
04518 Integrin signaling
107585898
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107585898
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107585898
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107585898
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
PSP94
Motif
Other DBs
NCBI-GeneID:
107585898
NCBI-ProteinID:
XP_016128565
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSLVRCQQEDDQEDFGSCIQDGQQYADNAVWKPEACRVCV
CDAGAVLCDEVICEDLRDCANPIIPPGECCPICPADTDEPIGSLGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGPRGEKGPKAEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGPA
GPLGPRGPSGPPGKPGSDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGESGTNGESGAPGPMGPRGLPGERGRSGPPGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVA
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLLGAKGAPGDRGVP
GVTGPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLVGHTGLRGLPGKDGETGAAGPPGPAGLAGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGSTGPRGERGFPGERGGAGPSGLQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGVVGIPGAKGDRGDSGEKGPE
GAPGKDGARGLTGPIGPPGPSGPNGAKGETGPIGSIGAPGARGASGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGESGQKGEAGSLGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGSPGPNGNPGPAGPAGAAGKDGPKGVRGDAGPPGRAGDAGLRGPSGAPGEK
GEPGEDGPSGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGASGVKGERGNTGPIGAPGAPGAPGAS
GPVGPIGKQGDRGENGPQGPAGSPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGASGDQGAAGSAGPSGAKGFAGPVGPAGKDGSNGQPGPIGPPGPRGRSGEA
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDIRSPDGSRKNPAHSCRDLKLCHPEWKSGDYWVDPNLGCAADAIKVFCN
METGETCVKPSTPKIPRKNWWSSKSKAQKHVWFGESMNGGFHFSYADSSQTPSTTSIQLN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAVLLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcattgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagactttggcagctgcatccaa
gatggccagcagtatgcagacaatgcagtatggaagccagaagcatgccgtgtctgtgtg
tgcgatgcaggggcagtgctatgtgacgaggtcatctgtgaggacctgagagactgtgcc
aatcccatcattccacctggagagtgctgtcccatctgcccagctgacaccgacgaacct
atcgggtcacttggtgcaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggacctccaggagagcagggaccacgtggcgag
aaaggacctaaggctgagaagggaaatcccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccaccaggacctaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcccggcccttctgga
gcacctggcccacaaggtttccagggcaaccctggagaggctggtgaacccggccctgct
ggtcctcttggaccccgtggcccttctggaccccctggaaaacccggaagtgatggtgag
gctggcaaacctggtaagtctggcgagcgtggacccccagggcctcagggagcccgtgga
ttccccggaacccctggccttcctggcatcaagggacacagaggacacccaggtcttgat
ggagctaaaggagaggccggtgctgcaggtgctaagggtgaatctggcactaatggtgag
agcggtgctcctggaccaatgggtccacgtggtctgcctggtgagagaggtcgttctgga
cctcctggtgctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtcctcct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggtgaa
gctggtcccactggagctcgtggacctgagggtgcacaaggaccccgtggagaggccggt
acacctggatcacctggacccgccggtgcatctggtaaccctggtactgatggtattcct
ggtgccaaaggatctgctggtgcttctggcattgctggtgcccctggtttcccaggaccc
cgtggcccgccaggacctcagggagctactggacctcttgggcctaaaggacaatctgga
gaccctggtatcccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgca
ggacctcagggtgcccctgggccatctggagaggaaggcaagagaggaccaagaggagag
cctggttctgccggacctctcggacctcctggagaaagaggagctccaggtaaccgtgga
ttccctggtcaggatggtctattaggagcaaagggcgcacctggtgatcgtggtgttcct
ggtgtgaccggcccgaaaggaggaactggagatcctggtcgcacaggcgagcctggtctt
cctggagccagaggtctcactgggcgccctggtgatgctggacctcaaggaaaagttgga
ccatctggtgcctctggtgaagatggacgccctggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaa
cctggagagaaaggacttgttggacacactggtcttagaggtttgcctggtaaagatgga
gagactggagctgctggtccacctggccctgctggtctagctggcgagagaggagagcag
ggtcagcctggtccatctggcttccagggtcttccaggacctactggagcccccggagag
cctggtaaacctggtgaccagggtgttcctggagagggtggtgctgctggttccactggg
ccaagaggtgagcgtggtttccctggtgagagaggaggagccggcccttcgggtctccag
ggaccaagaggacttccaggaactcccggtaccgatggacctaagggtgcaattggacca
gctggtgctgctggagctcagggccctcctggtctgcagggcatgcctggtgagagagga
gttgttggaatccctggagctaaaggtgacagaggtgacagcggagagaaaggacctgaa
ggtgctcctggcaaagatggtgcaagaggtttaactggtccaattggtccacctggtcct
tctggtcccaatggcgctaagggtgaaactggtcccattggctcaattggtgctcctggt
gctcgtggtgcctctggtgatcgtggtgagattggtgcacccggacctgctggctttgct
ggacctcctggtgctgatggccagcctggaattaagggagagcagggtgagtcaggacag
aaaggtgaggctggatcccttggaccccaagggccatcaggagcacccggcccagtgggc
ccaactggtgttacaggacctaagggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcaggaagagttggatcacctggccccaatggtaaccctggtcct
gctggccctgcaggtgctgctggtaaagatggtcctaagggagttcgtggtgatgccggt
cccccaggcagagcaggagatgctggactgcgtggaccttctggtgctcccggagagaag
ggagagcctggagaggatggtccttctggtcctgatggtccttccggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccagga
cttccaggaccctctggtgagccaggcaaacagggagcttctggctcttctggtgaccgt
ggaccccctggccctgttggacctcctggattgactggacctgctggagagactggacgt
gagggtaatcctggatctgatggtccacctggtagagatggtgcttctggtgtgaagggt
gagcgtggtaacactggcccaattggtgctcctggagcacctggtgcacctggtgcttct
ggtcccgttggtccaattggcaaacagggagacagaggagagaatggcccacaaggacct
gctggatcacctggacccgctggagctagaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtcagaagggacacagaggattcacc
ggtctgcagggtctgcctggacctcctggtgcttctggagaccagggtgctgctggatct
gctggaccgagtggcgctaaaggatttgcaggacctgttggaccagctggtaaggatggt
tctaatggtcagcctggacctattggaccacctggacctcgtggacgctctggagaggct
ggcccaagtggtccacctggtaaccctggaccccctggccctcctggtccccctggccct
ggcattgacatgtctgctttcgctgggttgtctcagcccgagaagggacccgatcctctg
cgttacatgcgtgccgacgaggcctccagctctcttagacaacatgatgtggaggtggac
gccacactgaaatcaatcaacagccagatcgaggacatccgcagcccagatggctcccgc
aagaaccctgcgcactcctgccgagatctgaaactctgccaccctgaatggaagagcggt
gactattgggtggatcctaaccttggttgcgctgctgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaagcccagcactcccaaaatcccacgcaagaactgg
tggagcagcaagagcaaggcgcagaagcatgtgtggtttggagagagcatgaacggtgga
ttccatttcagctatgctgatagcagccagactcctagtactaccagcatccagctgaac
ttcctgagactgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
gttgcttacatggaccaagccacaggcaacctgaagaaggccgttctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccatcgtggacattgctcccatggacatcggaggagcagatcaggag
tttggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
