Sinocyclocheilus grahami (golden-line barbel): 107586328
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Entry
107586328 CDS
T04918
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sgh04147
]
107586328
00535 Proteoglycans [BR:
sgh00535
]
107586328
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107586328
Exosome [BR:
sgh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107586328
Proteoglycans [BR:
sgh00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107586328
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107586328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
107586328
NCBI-ProteinID:
XP_016129114
LinkDB
All DBs
Position
Unknown
AA seq
1395 aa
AA seq
DB search
MRCSWGLSILLILYVGPLHAFWWNSSPVTKAPRVDNDTSVGGTTSKEEKIADVGSEKIDA
ARGIQGFVKNWDQNSTVNNNVTVRTPVISSKTAESGISLLQLIRNPPPEDITRVSGPNGQ
TAYLFTKDTNTEQMARAHLPTPFYRDFSLVFHLKPNSDDAGVLFSITDSNQKIMYIGVKL
SAVEDGKRKVIFYYTEPDSDTSQEVASFEVEHKPQEWSRFSLAVSLDQVSFYEDCESGPK
VVKFERSADDLELETHSKIFVGQSGADDPDKYQGMISELRVVGNPRAAERHCNDADDDDD
DDYESSGENGSGIGDRMDMDHNLGSVLQPLPSQPASTGRKPKLDTDDHQKATEPKRDSAI
LSSTGEEKGNRGEKEIKGSIGSGYPGPKGDRGPPGPPGPAGPQGPVTEVKSTGDIKVERV
QGLMGPPGPEGPQGEPGEPGQDGKPGPEGPQGFQGPPGTTGPKGQKGQKGEGHPGPRGSP
GPPGPPAPSISDRTTFMDMEGSGSLPHLCCHPGLPGPPGLPGPPGPLGPDWPTESELEPF
EAGPTGPPGQNGFPGRPGPPGRPGKPGPPGQKGDCGDLGLPGVAGEKQSSAFSFFSNWFP
SWETSGAQGPQDTVGIPGPEGMAGPPGPMGPRGPPGPPGPAFRITTDGKEKEVDLQYIPG
VMGPPGPQGPQGIPGLPGTPGLPGIPGQKGEEGQRGREGMSGLDGFPGKIGLKGERGWKG
EKGYPGRAVGPPGPPGPPGRPGQVTYINGSTNGEYGIPGPQGTPGIAGQAGFPGPMGPKG
DQGEPGLPGDSIKGQKGDPGLIVDSSGKPIYMGGLAGQLGEPGPPGPEGPLGPVGPPGPK
GEIGLPGRPSRPGLNGKKGAKGDSGGGYGYGYQGPPGPPGPPGPPGPPVSVGQYDGYDDG
SSRFPYAIKGDKGERGAPGIPGLPGLTTTFDIYAFKHEMKGELGPKGHKGEPGAGYYDPH
HSGAQGPPGRPGPPGPRGESTSGPPGRPGPPGAPGIGYDGRPGSPGPPGPPGSLLPGAHQ
SPQTISIPGPPGPPGPPGPPGHLTGVMVLRSVDTMTATTIQYPEGTLIYVKDNRELYMRV
HDGIREVMLGEYTPFPKGLDNPMEAVVPPQVVQYSQDYPTTSPQQGPPQPGAQYPVPLDP
RLQPSYDPHHRYTFPHYYSPTDPRHSPSIDSIYQHHPDSRKHIPSSHPDHSGYPDSRYER
THHHRPVIQKAKLPAHTHTSGHALHLIALNSPQLGNMQGIKGVDHQCFLQAQAIGLKGTF
RAFLSSQLQDLYSIVRQNNRKLLPIVNLQDEELFSNWESIFNGSEGKMNDNVHIYSFDGR
DVLDDDAWPEKMVWHGSSTQGSRQTDSYCETWRTGSHAVTGMASSLQEGYLLQQLPRGCS
SSFIILCIENSYIAE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgagatgcagctggggcttgtctatcctgttgattctgtatgtgggtcctcttcatgcc
ttttggtggaacagttcacctgtcacaaaggcccccagagtggacaatgacacttctgtt
ggtggaacgaccagtaaggaggagaaaattgctgatgtagggtcggaaaaaatagatgca
gccagagggatccaaggatttgtgaagaattgggaccagaactcaactgtgaataacaat
gtcacagtgaggacacctgtcatctcctcgaaaacggcagagagtggaatctccctgctg
caactaattagaaaccctccacctgaagacatcacccgggtttcaggcccaaatggacaa
actgcttacctcttcacaaaagataccaacacagaacagatggcacgtgcccaccttccc
acacccttctaccgagacttctctcttgtcttccatttgaagcccaactctgatgatgct
ggagtcctcttctccatcaccgactcaaatcaaaagatcatgtacatcggggtgaagctc
tcagcagtggaggatggcaaaagaaaggttattttttattacacagagcctgattcagat
acatctcaagaggtggccagctttgaggtggaacacaagccacaagagtggagccgcttt
tctctcgctgttagtctggaccaggtgtctttctacgaggactgtgaatctgggcccaag
gtggtaaagtttgagcgctcagctgatgacttggagctggagacacactccaagatcttt
gttggacaaagtggagccgatgacccagacaaatatcaaggcatgatctcagagttaagg
gtggttggaaacccacgagctgcagagcgtcattgtaatgatgctgatgatgatgatgat
gatgactatgaaagttctggagaaaatggaagtggaataggtgacagaatggatatggat
cataatttaggttctgttctgcagcccctgccttcacaacctgcttctacagggcgtaag
cctaaattggacacagatgaccatcagaaagctacagagccaaaacgtgattcagccata
ctctccagcacaggtgaagagaagggcaatcgtggagagaaagaaatcaagggtagtatt
gggtctggatatcctggccccaaaggtgatcgtgggcctccaggaccacctggaccagct
ggaccccagggtccagtaacagaagtgaaaagcacaggggatataaaggtggagagggta
cagggtctaatgggcccaccaggtccagagggcccacagggggagccaggtgaaccaggg
caggacggcaaacctggccccgaaggacctcaaggttttcaaggaccacctggtactaca
ggacctaaaggacagaagggacagaaaggggaaggacatccaggccccagaggctcacct
gggccacctggacctcctgcaccctcaatctcagacaggactacatttatggatatggag
ggttctggatcattgccgcatttatgttgtcatcctggtctacctgggcctcctgggctt
cctgggccgcctgggcccctaggaccagactggccaactgaatcagaattagaacctttt
gaagctggccccactggtccccctggacaaaatgggttccctgggcgtcctgggccccca
ggtcgacctggaaaacctggtcctccaggccaaaagggagactgtggtgatcttggctta
cctggagttgcaggggaaaagcaaagctctgctttctcttttttctccaattggtttcct
tcctgggagactagtggggcacagggtccacaggatacagtaggaatcccagggccagaa
ggtatggcggggccgcctgggcctatgggacctcggggacctccaggaccccctggacct
gccttccgaattactactgatgggaaagaaaaagaagttgatcttcaatacattccagga
gtcatggggccaccaggtccacagggacctcaggggatacctggactaccaggaacacct
ggtttaccaggtattccaggtcagaaaggtgaagaaggccaaagaggacgagagggaatg
tcagggttagatggctttccaggaaaaatagggctaaagggggaaagaggatggaaaggt
gaaaaaggttatcctggtcgtgcagtagggcctccaggaccaccagggccaccaggtcgt
ccaggacaagttacctatattaatggcagtacaaatggagaatatggaatccctggacca
cagggtacacctggtatagctggtcaggcaggattccctggaccaatgggtccaaaaggt
gatcagggggaacctggactaccaggagactctatcaagggtcaaaagggtgatcctggc
ctgatcgtagactccagtggtaaacccatttacatgggggggctagctggacagctgggt
gaaccaggacctccaggaccagaggggcctttgggaccagttgggccacccggaccaaaa
ggagaaatcggattaccaggcagaccaagtcgtcctggactaaatggtaaaaaaggagcg
aaaggcgattcaggtggaggatatggttatggatatcagggaccccctgggccgcctggg
ccacctggtcctccaggacctccagtttctgtgggacaatatgatggttatgatgacggc
agctcaagatttccctatgctatcaaaggggacaagggtgaaagaggagcacctggcatc
cctggcttgccaggtctcactactacctttgacatttatgcatttaagcatgagatgaaa
ggggagcttggtcctaaaggacataagggagaaccaggagcaggttactatgaccctcat
catagtggagcacaaggtccacccggaagacctggaccaccgggccctagaggagaatct
actagtgggcctccaggacgtccagggcctcctggagccccaggaatcggttatgatggt
cgcccaggtagtcctggtccacctggacccccgggatcgttgctgccaggtgcacaccaa
tccccacaaacaatcagtattcctgggcctcctggacctcctggaccccctggacctcct
ggacatttaactggggttatggtgttgaggtctgttgacaccatgactgcaacaactatc
cagtatcctgaaggcacgctaatctatgtaaaagacaacagagaactttatatgagagta
catgatggcatcagagaagtcatgcttggtgaatacactccattccccaagggtctggat
aacccgatggaagcagttgtgcctccacaagtggttcagtactctcaggattaccccaca
acctctccccaacaaggccctccacaaccaggagcccagtaccctgtgccacttgatccc
agacttcagccatcatatgacccacaccatagatatacatttccacactactattctcca
actgatccacgacactctccatcaatcgattcaatttaccagcaccatcctgattccaga
aagcacattcccagcagccacccagatcattctggctatcctgacagcagatatgaacgt
acacaccaccacaggcccgtcattcaaaaggctaagcttccagctcacacacacacatca
ggccatgcactgcacctgatcgctctcaactcaccccagctgggcaacatgcagggtatt
aaaggtgtagatcaccagtgcttcttacaggcccaagccattgggctaaaaggaacgttc
agggctttcctgtcatcccagttacaggatctatacagtattgttcgacagaacaacagg
aaactgttacccatagtcaatcttcaagatgaggaattattcagcaactgggaatccatc
tttaatggctcagagggcaagatgaatgataatgtgcacatctattcatttgatggtcga
gatgttcttgatgatgatgcctggccagagaagatggtatggcatggatcaagcactcaa
ggaagcaggcagacagacagctactgtgaaacatggcgaacaggtagtcatgccgtcact
ggcatggcttcctctctccaagaaggctacctacttcagcagttgccacgtggctgcagc
agctcttttatcatactgtgcattgagaacagctacattgctgagtga
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integrated database retrieval system
