Sinocyclocheilus grahami (golden-line barbel): 107586757
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Entry
107586757 CDS
T04918
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04382
Cornified envelope formation
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04518
Integrin signaling
sgh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107586757
04518 Integrin signaling
107586757
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107586757
09142 Cell motility
04820 Cytoskeleton in muscle cells
107586757
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107586757
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sgh04147
]
107586757
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107586757
Exosome [BR:
sgh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107586757
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107586757
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107586757
NCBI-ProteinID:
XP_016129764
LinkDB
All DBs
Position
Unknown
AA seq
1666 aa
AA seq
DB search
MTRTRQITSTSLLLFRRLLLALMTIHTALGGDKTERCDGRDCRVCQCFPPKGERGNPGVL
GQQGRQGLPGLPGPQGLRGEKGQRGLIGLPGLSGPEGDQGFQGDQGYAGLGGVPGHPGPG
GLPGLPGKDGCNGTRGQRGLNGEIGRPGFPGPMGLPGLKGAKGDAFTRTRFLPGTPGVDG
LPGIPGPAGLKGVFGPQGPPGGMGPDGFMGFQGLPGPRGLPGDTGSSLPGPKGDEGEQGK
QGKPGPFEYVEPNPEDYVKGEKGRKGQKGICGAPGPEGLEEPPAEKGEKGIIGLPGQRGL
PGYPGRNGFPGLKGALGDNGLPGLYGNPGPKGYSGDPGPKGNPKYHYNNMMGPTGDRGLP
GAAGLPGDRGAMGIPGPSGDPGASIRGPVGESGLQGLNGLKGEKGDPGKIYGSYLNYGEP
GKRGPTGPKGQNGIPGNPGYYCVPGERGESGQVGNRGPPGLKGVQGRKGPVGGCACEPLG
DLPGHPGPPGPPGFRGDPGQKGFRGPPGDDGFIGEMGGRGVTGPRGFTGVRGLKGEKGEV
MVICKKGEKGGTGSVGPSGKPGYNGRKGADGKMGAPGDPGSLGDSVVGPLGDRGCPGAAG
VKGLRGPPGPPGPNMMGSVGRRGEPGEPGPQGQTGPPGPKGVQGDALPCEPGIHGAPGSK
GMPGRKGEIGQLGNPGCKGQIGPDGPKGESGNPGDSRLAGFQGPVGSLGDPGDTGPDGTS
ISGSPGTPGNRGPQGLKGSFGDSTTGAPGQMGPGGIQGCQGPKGVPGSPGSIGLQGASGV
PGLPGRKGEKGMDGTPGAPGCPGGGPELCDKGQAGPPGKPGPPGFTGQRGCPGEKGPPGG
AGSQSIGAKGERGKPGTPGYQGRTGLQGPSGLEGDSGNPGAPGPKGLPGFPGQDGYPGNI
GKTGPLGAPGPKGFRGLNGYPACPGVNGAKGQKGYIGPPGPPGDMISVPVKGQLGPPGLN
GENGVFGERGNKGDPGPPGQPGYPGHNGPPGFESGQRGAPGVPGLSGEPGARGQHGPKGI
VGFPGDNGDPGDPGMSGLPGNPGFPGFDGPKGDKGESTGGPGPTGERGPCGYTGVSAPPG
DKGDYGDPGPQGPRGSSGPPGPPGNNGLTGHPGVVGPSGPCGRHGLEGPLGPPGKPGPKG
NQGCGGLRGSPGPPGLHGLDGLKGDMGEMGYRGEDLSGDRGFIGPAGDKGTPGDPGLQGP
SQTGVRGPNGQLGGQGDPGPMGPAGFRGEECKIPKPGPSGERGYAGPDGAPGPKGEKGEA
GRVFTVSGDFGEPGGPGSPGYKGEKGISGPRGLLGSDGLEGPKGEGGQCGLMGLPGPSGT
KGDCGPPGLCGAKGDKGDPGPKGETGAVKRPATPYPLPRGPTGAHGAPGPVGDVGDHGPN
GIGGLKGIKGQNGDIGFSGSSGTEGPVGLPGSPGESGEKGEGGSRGPPGPDGDQGPPGPL
SSGFLLVKHSQSETVPTCPKGLTELWNGYSLLYLEGQERAHTQDLGQAGSCLRMFSTMPF
SCCNMDTCDYASRNDKSYWLSTTASIPMNSILRGMEIQQHISRCVVCEASSPTITLHSQN
GTRPRCPSNWSRLWFGYSFLMHTGSGDEGGGQSLTSTGSCLQDFRSQPFVECQGSYGTCQ
YSPTFFSFWLTRASVEQFDSVPDRTVLNGQNQRDSISLCGVCMKNN
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcacccgccagatcacctcaaccagcctccttctcttcaggaggcttttattg
gcacttatgacgatacacacagctttggggggagacaagacagaaaggtgcgatggtcga
gactgcagggtctgccagtgtttcccccccaaaggagagagggggaatcctggtgtgtta
ggtcagcagggccggcaggggcttccaggtttgcctggcccccaaggacttcgtggtgaa
aagggtcaacgtggactcataggcttgcctgggctctctggcccggaaggagaccaaggc
tttcaaggagatcaaggctatgctggattaggtggagtgcctggtcatccagggcctggt
ggtcttccggggcttccagggaaggatggctgtaatggaaccagagggcagcgtgggttg
aatggtgagataggacgacctggcttcccaggaccaatgggactacctgggttaaaagga
gccaaaggagacgcatttacaaggacaaggttccttcctggaacacctggtgtcgatgga
ctacctggaatacctggaccagcagggctaaaaggggtctttggcccacaaggtccacca
ggaggaatgggacctgatggatttatgggctttcaaggattaccaggtccaagaggccta
ccgggagacacaggaagttcactgcctggaccaaaaggagatgagggggaacaggggaaa
cagggtaaaccaggtccttttgaatatgtggagcccaacccagaagactatgtgaaaggc
gaaaaggggaggaaaggtcaaaaaggaatttgtggagcacctggcccagagggtcttgaa
gagcctccagcagaaaaaggagagaaaggcataattggtttacctggtcaaagaggcttg
cctggatatccaggaagaaatggctttccaggacttaagggagcactaggggataatggt
ctccctggtctatatggcaacccagggccaaagggctactcaggagaccccggacctaaa
ggaaacccaaaataccattacaacaatatgatgggaccaactggagatcgtgggcttcct
ggtgcagccggacttcctggggatagaggggcgatgggtatacctggaccctctggtgat
ccaggagcatctataagaggtccagtgggtgaatctggtttgcagggtcttaatggactc
aaaggagaaaaaggtgacccaggaaaaatatacgggtcatacttaaactatggggaacct
ggaaaacgtggccctactggacccaaaggacaaaatggaattcctggtaatcctggttac
tactgcgtgcctggtgagcgtggagaatctggacaggttggaaatagaggaccccctgga
ttaaaaggtgttcaggggagaaaaggccctgttgggggatgtgcatgcgagccccttggt
gatctacctggtcatcctggccccccaggccctccgggtttccgtggtgatccagggcaa
aaggggttccggggtcctcctggtgatgacggattcatcggagagatgggtgggagaggt
gtaactggtcccagaggcttcacaggtgtcagagggcttaaaggagagaaaggagaagtt
atggtgatctgcaaaaagggggagaaaggtggcacgggatctgttggaccatctggaaaa
ccagggtataatgggaggaaaggggctgatgggaaaatgggtgcccctggagatcctgga
tctctgggagatagtgttgttggtccgctgggtgacagggggtgtccaggagctgctggg
gtaaaaggcctcagaggtccacctggtcctcctggccctaatatgatggggtcagtgggg
cgacggggagaaccaggggaaccaggacctcaaggtcagacagggccccctggtcctaaa
ggcgttcaaggtgatgccctgccctgtgaacctggcatacatggagccccaggttctaaa
ggaatgcctggtcgtaaaggtgagataggtcagcttggaaatccaggatgcaaaggacaa
attggaccagatggtcccaagggagagagtggaaatcctggcgatagtaggttagcagga
tttcaaggtccagttggatctttaggagatccaggtgacactgggccagatggcaccagt
attagtggctcacctggcacacctggtaatcgtggaccccagggtctgaaagggtctttt
ggagactctactacaggggccccaggacagatggggcccggtggtattcagggatgtcag
ggccctaaaggtgtccctggatctcctgggtcaattggattgcaaggtgcatctggagtc
cctggacttcctggtagaaaaggggaaaaaggaatggatggtacaccaggagcacctggt
tgcccaggtgggggaccagagctgtgtgacaaaggacaagctggtccacctggtaaacca
ggaccaccaggcttcactggacagagaggctgccctggagagaaaggaccacctgggggg
gcgggatctcaaagcattggagccaaaggagaacgtggtaaacctggtaccccaggctat
cagggacgcacaggccttcagggaccttcaggactcgaaggggacagtggaaaccctgga
gcccctggaccaaagggtttgcctggatttcctggtcaagatggctatcctggcaacata
gggaagactggccctttaggggctcctggaccgaaaggctttaggggtctcaatggatat
ccagcttgcccaggggtaaacggagccaagggccagaaaggatacattgggcctccagga
cctccgggagacatgatttcagtgcctgtgaaaggccagctagggccacctggacttaat
ggggagaatggggtctttggagaaaggggtaataaaggtgacccagggccgcctggacaa
ccagggtatcctggacataatggacctccagggtttgaaagtggccagcgtggagcgcca
ggcgttcctgggttgtctggcgagcctggtgcacgtgggcaacatgggccaaagggaatt
gtaggattcccaggggataatggtgatccaggtgatcctggaatgtctggtctgccagga
aaccctggtttccctgggtttgatggtcctaaaggtgacaaaggggaatctactggtggg
ccaggaccaacaggtgagagagggccatgcggatacacaggcgtgtcagctccccctggt
gacaaaggagactatggtgaccctggcccacaagggcctagggggagctctggtccacct
ggaccacctgggaacaatggcctgactggacatccaggagtggttggaccctccggtccg
tgtggaagacatggtctagaaggtcctctggggcctccaggtaaaccgggccctaaagga
aaccaaggatgcggtggtcttagaggatctccggggccccccgggctccatggacttgat
ggcctgaagggggacatgggtgaaatgggatatcgaggagaggatttaagcggtgatagg
ggctttataggaccagctggagacaagggcactccaggagacccagggttgcaaggtcca
tcacaaacaggtgttcgaggtccaaacggacagcttgggggccaaggagaccctggtcca
atgggtcctgcaggctttcgtggtgaagaatgtaagattcctaaacctggacctagtgga
gaacggggttacgctgggccagatggagctccagggcccaagggagagaaaggagaggca
ggcagggtgttcacagtgagtggtgattttggtgaaccaggtggtcctgggtcaccaggg
tataaaggagaaaaaggaatcagtgggcccagaggcctcctagggtctgacggcctagaa
ggtccaaaaggtgaaggaggacaatgtggacttatgggcctcccgggaccttctggcacc
aaaggagattgtggacccccaggactttgtggtgcaaaaggagacaaaggggacccaggg
ccaaaaggagagactggggctgtcaaacgtcctgctactccttatccccttcctcgtggt
cctactggtgctcatggtgcacctggcccggttggtgacgttggtgatcatggacctaat
ggcattgggggtctgaaaggtataaagggacaaaatggagatattggattctctggaagt
tctgggaccgaaggaccagtcggactacctggaagccctggagagagcggcgagaaagga
gaagggggctctcggggacccccaggaccagatggtgatcagggtcctcctggaccattg
tcctccggctttcttttggtgaagcacagccagtctgagactgtgcccacttgtcctaaa
ggcttaacagagttatggaatggctacagcctactatatctggagggtcaagagagagca
cacacacaagacctgggccaggcaggttcatgtttgcgtatgttcagcaccatgccattc
tcctgctgtaatatggacacctgtgattatgccagtcgcaatgacaaatcctattggctg
tctacaactgcctcaattcccatgaattccattctgagggggatggaaattcagcaacac
atcagcagatgtgtggtgtgtgaggcgtcatcgccaaccattacattacacagtcaaaac
gggactcgaccaaggtgtccatccaattggagcagactctggtttggatattcattcctt
atgcatacaggatcaggggacgagggaggtggacagtctctgacatcgacaggaagctgt
ttgcaggacttccgcagtcaaccgttcgtggagtgtcaaggttcgtatggcacgtgccag
tattcccccaccttcttcagtttctggctgaccagagcgagcgtggagcaatttgactcg
gttcccgacagaactgtgctcaacggacagaaccagcgcgacagcatcagcttatgcggt
gtctgcatgaagaacaactga
DBGET
integrated database retrieval system
