Sinocyclocheilus grahami (golden-line barbel): 107590814
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Entry
107590814 CDS
T04918
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107590814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sgh03000
]
107590814
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107590814
04121 Ubiquitin system [BR:
sgh04121
]
107590814
Enzymes [BR:
sgh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107590814
Transcription factors [BR:
sgh03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107590814
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107590814
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107590814
Ubiquitin system [BR:
sgh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107590814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Nup35_RRM_2
DZR_2
RDD1
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
107590814
NCBI-ProteinID:
XP_016135214
UniProt:
A0A672NHG0
LinkDB
All DBs
Position
Unknown
AA seq
772 aa
AA seq
DB search
MSRSPELKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADAEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVI
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKANPNFLQTSTCGEKSKSKPNSTQRPNSTNKEGWPLLQNYGKMVNGLTTEHRKSP
PLLDCLTDSDHMTPDEPDPEQGTEQNTGLPPFPSALEPTSPIGKPSEPINIGNGENISQT
SSSDSPSPPPGFTKPSLVVPISVAELTARSPFEGAAAESQSLFSDNSNFRHPNPIPSGLP
PFSSSPQGASDWPMTPEPQSLFSSDTIPVSSSTDWQAAFGFGSSAKQQQQQDDDLGFDPF
DVTRKALADLIEKELSVQEHSPLSPNPSSHQTSLPNGQQHLPHLQHRGLYNSFSLPQHMA
ARHPWMGLPTRNNLTHLNHTASAAHSHFLDLSMPAQHHSIGLGGIPISENNGSVESINVK
EWQDGLRALLPNININFGGLPNSTSSSSSSSTSSVNHIGVPVGSAGISHSLIWESTASWM
DPAIITGIPASTGNSFDCLQDDNPPHWLKSLQALTELDGPPSSSALPQPPHTSLLDAAAQ
LSLHRAAWAPYLPPPTLTPNQFHSPPPGFQTAFRPPAQTATDILQSAGIDRH
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcagtcccgagctgaaagaagaccccatggagtgcccactgtgcatggaaccg
cttgagattgacgatgtcaacttcttcccctgcacctgcggctaccaaatctgccgcttt
tgctggcaccgcatccgcacagacgagaacggcctctgccctgcttgcagaaagccttat
ccggaggatccggcagtatacaaaccactgtcacaagaggagatccagaggataaagaat
gagaaaaagcagaagcagaacgaaaagaagcagaaggtaacagagaaccgcaagcaccta
gccagtgtccgtgtagtgcagcggaaccttgtattcgtcgtgggactttctcaaagactt
gcagatgcggaggttctaaaacgcccggaatatttcggaaagttcggcaaaatccataaa
gtggtcatcaataacagcacatcatatgcaggttcacagggtcctagtgccagtgcctat
gtaacttacattcgttcagaggacgcccttagagcaatacagtgtgtgaacaatgtaata
gtggatggtagaacactcaaggcttctttaggtacaacaaagtactgcagttattttctc
aaaagcatgcagtgtcctaaaccggactgcatgtatttacacgaactaggggatgaagcg
gctagttttacaaaagaagaaatgcaggctgggaaacatcaagagtatgaacaaaaatta
ctccaagacctttacaaagcaaaccccaactttttacaaacctcaacatgtggggagaag
tcgaagagcaaacccaactccactcagagacccaatagtaccaataaagaagggtggccc
ttattacagaactatgggaaaatggttaacggtttaaccacagagcatcgcaaatcccct
cctcttttagactgcctaacagactcagaccacatgactccagacgaaccagaccctgaa
cagggaacagaacagaacacaggccttccacccttcccatcagccttagagcctaccagt
ccaattggcaaaccatcagaacccataaatataggaaacggggaaaatatatcacagaca
tccagtagcgattccccatctcctccacctggctttactaaacccagcctcgttgtgccc
atcagcgtggccgaactcacagctcgctcacccttcgagggggcggcagcagagtctcag
tctcttttctcagacaacagcaatttcagacatcccaaccccatccccagtggcctgccc
cctttctccagttcaccacagggagcctccgactggcccatgactccagaaccacagagc
cttttcagctcagacactatcccagtgtcgtcctccactgattggcaagcggcctttggt
tttggctcttcggccaagcagcagcagcagcaggacgatgacctcggcttcgacccattt
gacgtcacacggaaggccctggccgacctcatagagaaagagttgtcagtccaagagcat
tcccccctctctcccaacccctcttcccaccagaccagcctccccaacggccaacagcac
cttcctcacctccagcacagaggcctctataactcatttagcctgccccaacacatggcc
gcacgccacccctggatgggccttcccacccgcaataacctcacacacttgaaccacacg
gcctcagctgcgcacagccatttcttagacctgagcatgccggcccagcaccacagtatc
ggccttggggggattcctatatcagaaaacaatggttctgtggaaagcataaatgtgaaa
gagtggcaggacggactgcgcgcgctcctaccaaatatcaacatcaacttcggaggcctc
ccgaactctacctcttcctcctcctcgtcctccacttccagtgtgaaccacatcggggtg
ccggtaggctcggctggaatctcgcacagcctcatctgggaaagtacggccagttggatg
gaccccgccatcatcacaggtatcccagcatccacaggcaacagtttcgactgtctccag
gatgacaatccgccacactggctcaagtcgctgcaggcgctcacagagctggacggaccg
cccagctccagcgcactcccacagcccccgcacaccagcctcctggacgcggccgcccaa
ctgtccttacacagagccgcctgggccccttacctccctcctcccacactcaccccaaat
cagttccactccccacctccaggttttcaaacagccttcagacccccagcgcagacggcc
acagacatcctacagagtgccggtattgaccgtcactaa
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integrated database retrieval system
