Sinocyclocheilus grahami (golden-line barbel): 107593422
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Entry
107593422 CDS
T04918
Name
(RefSeq) collagen alpha-1(XX) chain-like
KO
K24357
collagen type XX alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
TPT
Pur_ac_phosph_N
VWA_2
Ig_DSCAM-DSCAML_C
YjeF_N
Motif
Other DBs
NCBI-GeneID:
107593422
NCBI-ProteinID:
XP_016138629
LinkDB
All DBs
Position
Unknown
AA seq
1619 aa
AA seq
DB search
MACPTQFICKALRSVGLVLFYYVFSIGITFYNKWLMKDFHFPLFMTLVHLVIIFCFSTLT
RFAMQCWMGKPRVTLPWKVYLSKVGPTALATALDIGLSNWSFLFITISLYTMTKSSAVLF
ILFFSLVFKLEVPNPFLILVVLLITSGLFMFTLKSTQFNLEGFIMVLLASFIGGIRWTLT
QVLMQKAELGLQNPIDTMYHLQPLMFLGLFPLFLLNEEVPQPELMLTTIRGRATVAGLDP
RQEYLLQVMVLNGTQEKLIAKRRFTVDGLREDELIRSGNREQKKKTHSIGSGSGEVDDVT
EALAAFPTVLYREPTTTESPAVPELEPEVDRNTKEKKKKDKNRSKTEDKNDQEENGGKSV
REEVTITNKPRKTTSTQTVTAVSTRKPFECSAGAQADLVLLVDGSWSIGRTNFRKVRDFL
EGLAVPFHIGPQGVQIALSQYSGDPRTEWHLNNFTSREPLLEAIRNFRYKGGNTFTGQAL
IHALENNLKKEVGARPNTPQFLLLLTDGKSQDDAIAAANRLKNAGIEIIAIGVKNADEAE
LRQVASEPLELNVYNVNDFPLLSKLVGRLARILCGKIEDRIKVKRIERPTQDPVLSYPSP
TDLQYVGLGSREVRLRWTIPSKRHKLDQKNRWLLLMEQLGVLWVQESAVHSLPAPTFPDV
LCSFPLFFHSSVCFFSVPLPSPLSLQFPMFSHSTLKITWVPGAVDVPAHRIIYSTNHGSD
VKQVEVKGVNTVLLQNLSSLSRYLVSVQSLYEKGLSTPITANVTTLRVPAPSDLRVTNFS
SSDLTVRWEAAADDVVSYLIKWISLSEGDLRQLTVDGESEGAILEEVEEDKEYQISLSAL
YADGAQSEAVAIRYSTLSGGGPSSLSISEETAVSMLVTWVHPNSHVLQYRVSYTPLNGDV
RENTVSLPGSERHVLLQNLLPDTRYSVLVTAEYRNREGGSASAQGKTTSLRVSSVSVVRS
DHSSICVSWRPVPAVSGYRIVIQALRDKQTKEDKVDAASSSHCFSELQPETIYRISVHSH
LGTVEGPAVTILHPTATAPVRIQVPPQLHPIQREVCPETTIRNHVVKGFDMMEAFGLTQR
AHSTIEGVAAEPFIFSTLPSYTLYRDVQLTQSTSFIHPAGFSPEHTISTAFRLLQDSPRE
PFALWQLTDNDFQPKMGVVLDPEKKVLLYFSLDYRGEIQELTFDQPQVHSVFYGSFHKIH
LSVSQVSVSLSVDCQRVGERPARPLGTLPTDGFEMLGKLVRTRGPHSGSAAFQLQSFEIV
CNTTWVSEDNCCDLPSQRDEESCPAPAYACTCTTDVPGAPGDTGPPGRPGPRGEKGEKGE
VGQKGEVGPPGKSGPEGGFGALGPSGPRGITVMGKVGPPGARGEKGDIGRPGSQGLPGPP
GPKGEEGMAGPKGTRGMEGNIGSPGIPGPRGFQGMPGHPGPVGERGPLGSVGPTGLSGSK
GERGEKGEPQSLAMIYQLVTQACEKLVHSNPEVGCFSERDESKASAHPGTSSTTRRAWDT
RGKGATWIPRPSGSTRKQRRVWETRFCDSLIGRRGMSGEKGSPGANVVGPQGIKGFAGPP
GESKIGEPGPKGEDGKAGPLGIPGASGQQGEIGPPGICDSSGCYQGPPAAEDPYLGYQP
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcccgacgcaattcatctgcaaggcgctgcgctctgtgggcctggtgcttttc
tactatgtgttttccatcggcataacattctacaacaagtggctcatgaaggacttccac
tttcctctgttcatgacgctggttcatctcgtaatcattttctgtttctccacactgaca
cgctttgccatgcagtgctggatgggaaagcctcgagtgacccttccctggaaggtttac
ctttctaaagtgggcccaacagccctggcgacagcgctggatattggactgtccaactgg
agcttccttttcatcactattagcttgtacaccatgaccaagtcttcagccgttctcttc
attctgtttttctctctggtcttcaagctggaggtgccgaacccattcctgatccttgtg
gtgttgctgataactagtggtctgttcatgttcactctcaagtccactcagtttaatctg
gaaggtttcattatggtcctgttggcctcttttattggagggatccgctggactctcact
caagtgctcatgcagaaagcagagcttggccttcagaaccccatagacactatgtatcat
ctgcagcctctcatgttcctgggcctctttcctctgtttcttcttaatgaagaggttcct
cagccagagctgatgctcactaccatacgcggccgtgcaacagtggcaggcctggacccc
agacaggagtatctcctccaagttatggtgctcaatgggacacaggagaagctcattgca
aaaagacgcttcactgtcgatgggttgcgtgaggatgagctgatccgtagtgggaacaga
gagcagaagaaaaaaactcactccattggttctggatctggagaggtggatgacgtgact
gaggctctagcggcctttcccactgtgctctaccgagaaccaacgactacagagtctcct
gctgtacctgagcttgagccagaagttgacagaaacaccaaagaaaagaaaaagaaggac
aagaatcgatccaagaccgaggataaaaatgatcaagaagaaaatggagggaagtcggtg
agagaagaggtcaccatcaccaacaaaccgagaaaaaccacctcaacccaaactgtcaca
gctgtttccacacgaaagccgtttgaatgcagtgctggagctcaggctgatctggtcctt
ctggtagacggatcctggagcatcggccgcacaaacttcagaaaagtgcgtgacttcctg
gagggcctggctgtcccctttcacattggaccacagggtgtgcaaatagcattatctcag
tacagtggagatccacgtactgagtggcatcttaataacttcacctctagagagccgctc
ctggaggccatcaggaacttcagatacaagggaggcaacactttcacaggccaggctctc
atacatgctcttgagaacaatctgaagaaggaggtgggggcacgacccaacaccccacag
ttcctgctgctgctgactgatgggaaatctcaggatgatgctattgctgcagccaacagg
ctgaagaatgccggcatagagatcattgctataggtgtgaaaaatgcagatgaggcagag
ttgaggcaggtggcgtctgaaccgctggagctaaatgtgtataatgtgaatgattttcct
ctgctcagtaaactggtgggaagactagcacgcatcctctgtggcaagattgaagaccgt
attaaagtgaagagaatagagcgtcccactcaggacccagttctgtcctatcccagccca
actgatctgcagtatgtaggactaggctcgagagaggtgcgcctgcgttggaccatcccc
agcaaaagacataaattagatcagaaaaacagatggctgcttctcatggagcaattggga
gtattgtgggtgcaagagagcgctgttcattcacttcccgcaccgacatttcctgacgtt
ttatgctcattccctttgttctttcactcgtctgtctgttttttttcagttccattgccg
tctcctctcagtttgcagtttcccatgttcagtcacagcactctgaagatcacgtgggtc
cctggagctgtcgatgttcctgcacaccgcatcatctacagcaccaatcacggcagtgac
gtcaagcaggtggaggtcaaaggtgtgaacacagtgttgctacagaatctgtcttccctc
tccaggtatctggtgtcagtgcagtctctctacgaaaagggcctgtccactcctatcaca
gccaatgtcactaccttaagggtcccagctccctcagatctgagagtcactaacttctct
agcagtgacttaacagtgcgatgggaagctgcagcagatgacgtggtctcctatctcatc
aaatggatctctctcagtgaaggagacctcagacagttgacagtagatggggagagtgag
ggggcaatcttggaagaggttgaagaagataaggaatatcagatttcactctctgcatta
tatgccgatggtgctcagagtgaggctgtggccatacgatacagcaccttatctggaggc
ggtccgagcagtttatccatttcagaggagacagcagtcagtatgctggtcacctgggtt
caccccaactctcatgtgctgcagtaccgtgtgtcatacactccacttaatggggatgtg
agggaaaacacagtgtcattgccaggcagcgagaggcacgtcctgctgcagaatctgctg
cctgacactcgttacagtgtgctggtgactgctgagtaccgcaaccgagagggtggcagc
gcctcagcccaggggaagaccactagcctgcgggtgagcagtgtgagtgtggtgcggtct
gaccactccagtatatgtgtgtcctggaggcccgtaccagctgtcagtggttatcgcata
gtcatccaggctctcagagataaacagactaaggaagacaaagtagatgctgctagcagc
agccactgtttctctgagttgcagcctgaaacgatctaccgcatcagtgtgcactcccat
ctgggaacagtagagggccctgcggtcactatccttcaccctacagcaactgctccagtg
agaatccaggttcctcctcaactgcatcccatacaaagagaagtgtgtcctgagacaaca
atcagaaatcatgtggttaaaggctttgacatgatggaagcattcggtctaactcagaga
gctcactctactatcgagggtgtggcagctgaacctttcatcttcagcaccttacccagt
tacaccctctacagagatgtacagctgacccagagcacaagcttcatccacccggctggc
ttttctccagaacacaccatcagcacggccttcaggctcttgcaggattcacccagggag
ccctttgcactctggcagctcacggacaatgacttccagcccaagatgggggtggtgctg
gaccctgagaagaaggttctgctgtatttcagtctggactacagaggagagatacaagaa
ctgacctttgaccagccacaagtccactcagttttctatggcagctttcataagatccat
ttgtccgtcagtcaggtgagtgtatctctgtctgtagactgccagcgggttggcgagagg
cccgcacgccccctgggaactttgcccactgatggttttgagatgttgggcaaactagtg
aggacacgtggacctcacagcggatctgcggcttttcagctgcagtcctttgagattgtg
tgcaacactacttgggtatcagaagacaactgctgtgatctgccctcacagagagatgag
gagagctgtcctgcccctgcttatgcatgcacctgcaccaccgacgtccctggagcacct
ggagacactgggccacctgggagacctggccctcgtggggagaagggagaaaaaggagag
gtgggacaaaagggagaggtgggtccacctggtaaatcgggccctgagggcggctttggc
gctcttggaccctctggtcctcggggaataactgtaatgggcaaagtgggcccaccagga
gcaagaggggaaaaaggagatattggaaggcctgggagccagggtttaccagggcctcct
ggtccaaaaggtgaagagggcatggctggtcctaagggcaccagaggaatggagggtaat
atcggtagcccaggaatcccaggaccaagaggtttccagggtatgcctggtcatccaggg
ccagtgggagagagagggccattaggttctgtagggcccacaggtctttctggaagtaag
ggtgagagaggagagaagggtgagccacagtctcttgccatgatctaccagcttgttaca
caggcctgcgaaaaacttgtgcacagtaatcctgaagttggatgcttttctgaacgagat
gaatcgaaagccagtgcccatccaggaaccagtagcaccaccaggagagcctgggatacc
agggggaagggggccacctggatcccgaggccctcagggtcgacaaggaagcagaggaga
gtctgggaaaccaggttctgtgattcacttataggacgcagagggatgtctggtgagaag
ggctctccaggagcaaatgtggtgggaccacaaggaataaaaggttttgcaggacctcca
ggtgaaagtaaaataggggaaccaggtcccaaaggtgaggatggtaaagcaggacctcta
ggtattccaggagcttcaggtcagcaaggagaaattggaccccctggtatatgtgacagc
agtggatgttatcaaggacccccagctgcagaggatccctaccttggataccagccttga
DBGET
integrated database retrieval system
