Sinocyclocheilus grahami (golden-line barbel): 107595813
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Entry
107595813 CDS
T04918
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03013
Nucleocytoplasmic transport
sgh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107595813 (upf3a)
03015 mRNA surveillance pathway
107595813 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107595813 (upf3a)
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107595813 (upf3a)
mRNA cycle factors
P-body specific factors
107595813 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
RRM_1
Motif
Other DBs
NCBI-GeneID:
107595813
NCBI-ProteinID:
XP_016141847
UniProt:
A0A672PRC5
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MRSEKEQRTGSRERGSVEIQFRDCQREQDNVAVNPKHKEEKKETFSKVVIRRLPPSLSKD
QLEEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDIIIFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDRDDDMDSDRLKDKADSGEIEKNRWEKPAGHTKSK
DSKDNRSQIESDKEQREGHGRRQRDKEHRGRDEERKRQRHHYEFDKFMRRKEETKWGKGY
CQDRAKKDQHHGYSYCPETGDKLGKEEREDMGSRKERIRNKSVLVHQEKRTSQSEGPDQI
GGAQPAKDRPAMQLYQPGARNRKRMGSGNKTFDFPPISPEHGGEHCYKTVIGAGSEKSAD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggagcagaggacaggaagcagggagagaggcagcgtcgagatccag
ttcagggactgtcagagggagcaggacaacgtcgcggtgaacccgaagcacaaggaggag
aaaaaggagaccttcagcaaggttgtcatacgccgactgccacccagtttatcaaaagac
cagctcgaggagcatctgagtcctcttccatcttttgactattttgagttcttccccgct
gatcagagcttatacccacatctcttttcaagagcatacatcaacttcaaaaacccagag
gatatcattattttcagagatcgctttgatggctatgtattcattgataataaaggccaa
gagtatccagctgttgtagaatttgctccatttcagaaagtttcaaagaaaaagttaaag
aagaaagatgctaaagcaggaactattgaagaagacccagaatacaggcgatttctggaa
aattactcttgtgatgaggagaaatcaatggccaatccagaaacactattgggagagatt
gaagctaaaacccgagaactcatagccaaaaggacaacacccttgctggaatacattaaa
aacaagaaattagagaaacagagaataagagaggagaaaagagaggagaggcgaaggagg
gaactggaaaagaagcgacagagggaagaggagaagaggaagcgcagagaagaggagaga
cgaaagcggaaggaggctgaaaagcagaagaagctttctgaaaaggagataaagatcaag
cttttgaagaagtgtgatcgagacgatgacatggactcagacagactgaaagataaagca
gacagtggagagatagagaagaacagatgggaaaagccagcaggacacactaagtcaaag
gattccaaggataataggagtcaaattgagagtgacaaggagcagcgggaaggtcacggc
cgtcgccagagggacaaagagcatcgcggcagagatgaggagcgcaaacgacagaggcat
cactacgagtttgacaagtttatgcgacgcaaggaggagaccaaatggggtaaaggctac
tgccaggacagagccaagaaagaccaacatcatggctattcttactgcccagagactgga
gacaaactgggaaaagaggaacgagaggacatgggcagcaggaaagaacggattcgcaat
aagtctgtgttagtgcatcaggagaaaaggacttcccagtctgaggggccagaccagata
ggaggggctcagccagcaaaggaccgaccagcaatgcagctgtaccaacctggtgctaga
aaccgcaagcgaatgggctctgggaacaagacgtttgacttcccaccaatctctcccgaa
cacggaggagaacactgctacaagacggtcattggtgcaggctcagagaagagtgctgac
gagtaa
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