Sinocyclocheilus grahami (golden-line barbel): 107596476
Help
Entry
107596476 CDS
T04918
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107596476
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107596476
09142 Cell motility
04820 Cytoskeleton in muscle cells
107596476
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sgh04147
]
107596476
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107596476
Exosome [BR:
sgh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107596476
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107596476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107596476
NCBI-ProteinID:
XP_016142707
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MKLWSFVLPVVLYAVSAQGGSKLQEPCAGRDCSGPCPCLPLKGSRGQPGELGQAGSSGPE
GFIGAPGPVGPKGEMGHVGRNGPSGPNGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGDPGNRARDGFPGLPGGPGVPGPKGLKGEPFYIDLSGQTFFVEGPPGPVGSSGP
MGPRGPDGFTGLPGPPGPSGPPGSPGQGYKGEPGEKGDVGSPGDPGCPLVSGVVELVGFP
KGDKGTKGDKGYDGVPGFPGRPGQPGLFGYRGETGEKGILGLPGSRGPPGLNGPPGIPGI
KGFPGTPGFPGQQGFTSPKGERGNPGPPGPIVDPVGGIKGPPGDPGFPGYPGITGATGFP
GVPGQPGPPGQPAFVSGRPGVSGFPGGRGPKGQRGNPGRNSYGPEGLPGSQGFPGPPGLP
GPPGSTSNLFSAGQPGFPGQPGPRGPPGDRGFKGFKGEDGDCNCLGGGTIGAQGPQGPPG
PTGFVGLNGVKGEIGDLGFPGSRGPQGLDARAGDRGFKGRKGEKGNSFFPEGRGQKGDMG
QQGLPGPLGASGNSGKDGSPGFPGEPGLPGEPGSGVSGDKGFPGIPGFKGRPGDRGEPGI
GYPGVAGFKGSQGDPGFNGLPGTPGPKGSPGDSCGQAGLNDASLEEGGTPLPCRIPGELG
DPGYFGNPGLPGPKGQPDSPGASGRPGFDGPKGERGEPGSGGQPGPQGFPGPRGDPGLPG
ITNAGLPGPPGRDGFPGLPGAKGEPGVVLGATPGGLGSPGRPGEPGDKGQPGVPGLLGRP
GNDGRNGFPGIKGERGVDGIPGLVGPIGPPGEIPPGGVPGPRGPPGAKGFDGPSGCQGFP
GLKGMRGDPGPQGPGGIKGVPGLPGIPGSQGFRGPPGPPGIGTRPGIPGRPGVKGEKGSL
GLLGFPGLPGSPGVPGGPGVKGLPGFDGQDGLPGGTGSRGTKGERGTPGLPGPSPVLPVE
QLEKGQKGEPGGGGLPGFPGPRGDKGFPGSPGRQGFPGLPGVADQAKGFPGQPGLPGIPG
SFGFPGPKGSPGVMGFPGLPGLSGDDGVPGVQGFPGTPGQSGGKGEKGDSYEYSGPPGTK
GVIGNPGFPGGPGLPGEPGDPGFPGILGFQGQKGFPGEPGAPGFGSSPGLPGIRGLPGYP
GQKGRDGDLGRSGAPGSPGEKGFPGSPGLDGLNGLPGSKGLSGVPGVTEGGRTGAPGVNG
LKGERGSSKPGAPGRPGEKGSRGDTGASGLRGWPGNPGPPGPPSPSNIPGPPGDPGLPGL
DGREGPLGPPGLPGPPGPGTVQGDRGDAGLPERPGIPGPRGDPGDFGAPGFQGSPGFKGQ
SGDPGFTGVRGPPGFPGEPGDYGRNGPKGLMGFPGPKGRPGTVVPRNITDSMPLGERGPP
GLDGFVGQEGMPGLPGSPGFPGPKGLRGPVGRLGPVGAVGSPGAFGDPGSPGIQGPTGTQ
GARGPTGMQGLPGPPVRSTGIGYTLVKHSQSSQVPMCPQGMAKLWEGYSLLYVEGQEKAH
NQDLGLPGSCLPHFSTIPFLYCTVDEICYYASRNDKSYWLSTTAPIPMMPVADQQISQYI
SRCSVCEAPSQAIAIHSQDLSIPTCPQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCL
EDFRATPFIECNGARGTCHYFSNKYSFWLTTVDQNEQFVQGPSQETLKGDEYRSRISRCQ
VCMKIL
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttaccagttgtcttgtatgcagtgtctgctcaaggggga
tcaaagctgcaggagccgtgtgcaggccgggactgcagtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggcaaccaggggaacttggacaggcaggcagcagtggtcctgag
ggtttcattggggctccggggccagttggacccaaaggagaaatgggccatgtaggacgc
aatgggccttctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggtgttccaggacaccctggtcaggaggggcccaggggacctccaggcttggac
ggctgtaatggcacacgaggtgacccaggcaacagagcccgtgatggatttcctggtctt
cctggtggtcctggagtccctggtccaaaaggtctaaaaggagaaccattttatatagat
ctttctggacaaacttttttcgtcgaaggccctccaggtccagtgggatcttcaggtcca
atggggcctagaggtccagatggatttactggtctgccgggtccacctggtccttctgga
cctccaggaagtccaggtcagggatacaaaggagagccaggagaaaagggagatgtgggc
tcgcccggtgacccaggctgcccactggtcagtggagtggtggagcttgttggctttccg
aaaggagacaaaggaactaagggtgataaaggctatgacggtgttccaggttttccaggg
agaccaggacaaccaggcctatttgggtacagaggtgagactggagaaaagggaatcctg
ggcttgccaggctcaaggggtccacctggtctgaacggtcctcctgggattcctgggatt
aagggcttccctgggactcctggttttccaggacaacaaggttttaccagcccaaagggt
gaaagaggaaacccaggtccacctggaccgattgtggatccagtgggtggaattaaaggt
cctccaggtgatcctggctttcctggttatccggggataactggagctaccggttttcca
ggggttcctggtcagcctggtcctccggggcagcctgcttttgtctcaggtcgtccaggc
gtctctgggttccccggtggccgtggacccaaaggacagaggggaaacccaggtcggaat
tcttatggtcctgaaggtcttcctggaagtcagggttttcctggacctccaggtctccct
ggaccaccgggcagtacatcaaacctgttttccgctggacaacctggttttccaggtcag
cctggtccaagaggacctcctggagacagaggctttaaagggtttaaaggagaagatggt
gactgcaactgtttgggtggaggaacgattggtgcacagggacctcaagggcctccaggg
cccacgggttttgtaggactcaatggagtgaagggagaaattggtgacctaggcttccca
ggatcccgtggtccacagggccttgatgctcgtgcaggtgacagaggctttaaaggacgt
aaaggagagaaaggtaattctttcttcccagaaggcagaggacaaaaaggtgatatgggt
caacagggtcttcctgggccacttggagcaagtggaaactctggaaaggatggatctcct
ggcttccctggagaaccaggtctacctggggagcctggttctggggtgtctggagataaa
gggtttcctggtattccagggttcaaaggtcgtcccggtgacaggggtgaacctggaatt
ggctatcctggtgtagctgggttcaaagggtcacaaggtgatcctggattcaatggtctt
cctggaacacctggacctaaaggatctccaggtgacagctgtgggcaggcggggcttaat
gatgcctctttggaagagggaggaacacccctgccctgtaggattcctggtgaacttgga
gatccaggttactttggaaatcctgggttgccagggccaaagggtcagcctgattcccca
ggagcaagtgggcgcccagggtttgatgggccaaagggtgagagaggagaaccaggctct
ggaggtcagccaggacctcaggggtttcctggacccagaggagatccaggtttaccagga
ataacaaatgctggcttaccagggcctccaggaagagatggttttccaggtttgccagga
gctaagggagaacctggtgtggtgcttggggccactcctggaggtctaggttctccaggg
agaccaggagagccaggagacaagggccaacctggtgtgcctggtttactagggaggcct
ggtaatgatggacgcaatggctttcctggcataaagggagaacgaggtgtggatggaatt
cctggtcttgtaggtcccataggtccaccaggagaaatccctcccggcggtgttcctggt
cccagagggccacctggagctaagggatttgatggaccttcaggctgccaaggtttccca
gggctgaagggtatgagaggagatccagggcctcaagggcctggtggaataaagggtgta
ccaggactccctggcatcccagggtcacagggatttaggggacctcctggaccccctggc
attgggacacgtcccggcatacctggaagaccaggagtaaagggggagaaggggtctctt
ggattgttggggttcccaggtttacctggttctcctggagtcccaggtggcccaggtgtt
aaaggtttacctggttttgatgggcaggatggcttacctggaggaactggatcaagagga
accaaaggggaacgtggtactcctggtcttccaggaccctcaccagtgcttccagtagag
cagctggaaaagggtcaaaaaggtgaaccaggaggtggtggactgcctggtttcccagga
ccaagaggtgataagggttttccagggtcacctggacgtcaaggctttcctggattacct
ggtgttgcagaccaagcaaaaggttttcctggccagcctggactcccaggtattcctggc
tcctttggcttccctggtcccaaaggttcacctggagttatgggcttccctggcttacca
ggcctgagtggtgatgatggtgtacctggtgttcaagggttcccaggaactccaggacaa
tctggtggcaaaggtgagaaaggtgattcatatgaatattctggaccccctggaacaaag
ggtgtgattggaaatcctggattcccaggtggtccaggacttcctggtgaaccaggtgat
cctggtttcccaggaatattgggatttcaaggccagaaaggttttccaggagagccggga
gcacctggatttggtagctcaccaggcctcccaggcattaggggtctccctggttatcca
ggacagaaggggcgtgatggagatttaggccgttctggagctccaggttcaccaggagag
aaaggttttccaggatcacctggtttagatggactcaatggtcttccgggatccaagggc
ttgtctggagttccaggtgtgactgaaggtggtcggactggagctcctggtgtgaatggc
ctgaagggggagagaggctcatcaaagcccggagcacctgggcgccctggagaaaaagga
tccagaggagacactggtgcctctggtttgagaggctggcctggtaatcctggcccccct
ggcccacctagtccttctaatatccctggtcctcccggagaccctggacttccgggatta
gatggacgagaaggtcccttaggccctcctggcctacctggtccaccaggccctggaaca
gtccaaggagacaggggagatgccggacttcctgagcgaccaggaataccaggaccacgt
ggagaccccggtgattttggagcacctggatttcaaggcagtcctggttttaaaggacaa
agtggtgaccctggctttactggtgtacgtggaccaccagggttccctggagaaccagga
gattatggcaggaatggacccaaaggattaatgggttttcccggtcctaagggacgtcca
ggtactgtggtcccgcgtaacataaccgacagtatgccattgggtgaacggggcccacca
ggtcttgatgggtttgttggtcaggaaggaatgccaggcctgccaggcagtccaggattc
ccaggtcccaaaggactcagagggccagtgggtagacttggtcctgttggtgcagttgga
tctcctggagcttttggtgaccccggatctcctggaatccaaggacccacaggaacccaa
ggagcccgtggcccaacaggaatgcaaggtcttcctggtccaccggtgcgcagtaccggt
atcggttatactttggtgaaacacagtcagtccagccaggtgcccatgtgtccgcaaggc
atggccaagctgtgggagggctacagtttgctctatgtggaggggcaggagaaagcacac
aaccaggacctgggattgcccggctcctgcctgccgcatttcagcaccatccccttcctg
tactgcacagtcgatgagatctgctactatgctagtcgcaatgacaaatcctattggctg
tccaccacggcacccattcccatgatgcctgtggcagatcagcagatatctcagtacatt
agccgctgctcagtgtgtgaagctccatctcaagcgatcgctatccatagccaagacctc
agcataccgacctgccctcagggctggagaagtctgtggattggttactccttccttatg
cacacagccgctggtgccgaaggaggcggtcagtcattggtgtctcctggctcttgtctg
gaggatttccgcgccacccccttcatcgagtgcaacggagcccgcggcacctgccactac
ttctccaacaaatacagtttctggttgaccacggtagatcagaacgaacagttcgtccag
ggcccttcccaggagacgctgaagggagatgagtaccggtcacgcatcagtcgctgtcaa
gtctgcatgaagatcttgtag
DBGET
integrated database retrieval system