Sinocyclocheilus grahami (golden-line barbel): 107596926
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Entry
107596926 CDS
T04918
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107596926 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107596926 (edc4)
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107596926 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
107596926 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_Prp19
Pdc1_Ge1
Uteroglobin
DUF4575
HVO_2928_N
Motif
Other DBs
NCBI-GeneID:
107596926
NCBI-ProteinID:
XP_016143272
LinkDB
All DBs
Position
Unknown
AA seq
1432 aa
AA seq
DB search
MASGSNMDIEGATQHLRDILKLDRPGNSAEPSLVESQRKPSFNGELNGVLGADLIGAGGL
ATMVEPTAHNSDKLNGQDTQTICLSGDDGSTCVPIRANNVEIVSSRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNSYLAYAIRGANNHSMIRVLRLGSTERSLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNMFIWQLTSHSSKIHDEVIVHIQRPEDTPLNSNRRLIWCP
FIPEDNDENPEDACQTLALLHEDRAEVWDLDILRSNNSSWPVDATELKEGFITIRGHTAR
ISEGALSPDGTVLATASHDGFVKFWQIYIEGQDQPRCLHEWQPHNGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDLSAEF
LILSDVQRKVLYVMELLQDQEKGCASFTAVSEFLLTHPVLSFGVQDVARARLRHTEVLPP
DEESESMTTEGNQGPSESKSGIQIKLYCVHTKSLQDVQIWFQPNQGASSSLFMPQSGSQE
GFGFSDPLADLNVEAMSSDKESGDSGSQNDLTKILALPTPADFMSPAPSALPKLMTPDAF
MTPSASMPASPGSSASSLTIVMAMSSSDSGARGGDDLAQSPKMSVECGNSSSLTLNASAG
SPRSNSILISGLGENIQAFSPPLVLSTSLLREASLLCEAAPYSHRLPLPYFPSPLPQVSP
PNPPLSLDLQAIDPMVVPQASPTRARSPDVISSASTAMSLDIPEIASETLQRGLAGAAAD
SGPVLHSDSMASAASVLHLLSPRARSSAEHSLLPLELGAASVDGEQRLNNTPSLLETALS
QENAVAAGGSCSDSSVNHTWPAAPDITRETRNSLRDNGLGDCSREEIKDRHISSPYHRRT
YHLTQNDSQDASAEQSDHDDEVASLASSSGNCGPRSSHRLPVKDWKTSPRSSPKLKRKSK
KDEGESSQSKQIENQMSTEVQDELLQMLRSQQREIAELRQNQLEILQRVTSHMDSVQSSI
MAHIEHAMLAQQEQEQRRMERILAEGQSCNQQFQDQLVQQLVQTLNNSLCNRLDKVLREE
MKKTVPQAISKSLDPVTGQMSSTITAKLTAVEGTLKENVTKVVKSKNTTDAIGRAAAEAM
QGPIQAAYKETFQSIVLPVFERGCQSMFQQINDSFKQGTNEYIQQLETHIKNRKQRDQDA
RDPVIGQLQQMIDTLQNSQDQLATTVTASVCSDVQHQLHMIVGNLQDSILTQVQRIVKGE
VSLAMKEQQAAVTSSIMQAMRSAAGTPVPSAHLDYQAQQASILQLLQQGQLNEAFQQALS
AADLNLVLYVCETIDSQQVFGQQPCPLHQAVLLSLIQQLSTNLSTRTELKISYLEDAVMN
LDHGDPVTRDHMSAVLSQVRQKLLHFLQQDAHSPLCKRARRLMMMLQGLVNH
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggcttctggttccaacatggacatagagggcgcgacccagcaccttcgggacatctta
aaactggatcgtcccggtaattcggccgagccctctttggtagagagccagagaaaacca
tctttcaatggagagttgaatggcgttcttggagcggatcttattggagcaggaggactt
gcgacaatggtggagccaactgctcacaactcagacaaacttaatggacaggacacacag
actatctgcctttcaggagatgatgggtccacctgtgtccccatcagagcaaacaatgtt
gaaattgtgtccagtcgtgactctagtattgacagtaaggctcgtggcagcaacaaggtt
aaaattcagccagtggccaaatatgactgggagcacaagtactactatggcaatttaata
gccgtgtccaactcctacttggcttatgccatcagaggcgcaaacaatcattctatgatc
cgagtgttgcggctgggatcaaccgagcgttcgctgctgaagggcttcactggtgcagtc
acagaccttgctttcgcccacttggactccaccctgttgggctgcgtggatgaggctgga
aacatgttcatttggcagctcactagccacagcagcaaaatacacgatgaagtgatcgtt
cacatccaaaggcctgaggacaccccactaaattccaaccgcagactcatctggtgtccc
ttcatcccggaggacaatgatgagaacccagaggatgcgtgtcagacactggcactcctt
catgaagaccgagctgaggtttgggaccttgacatcctccgatccaataacagctcatgg
cctgtggacgccacagaactgaaagagggcttcatcaccattagaggacacacggcacgc
attagtgagggagctctgtcccctgatggcacggtcttggccacagccagtcatgatgga
tttgtaaagttttggcaaatctacattgaaggacaggaccaacccagatgcctgcatgaa
tggcagccacataatggacggcctctttcctgcctgctcttttgtgacaaccacaagaag
caagacccagaagttcctttctggcgcttcctgatcactggagctgatcagaaccaggaa
cttaagatgtggtgcacagtgtcatggacgtgcttacaaactatcaggttttcccccgat
ccattcaacagcagtgtactacccagcttgaaggccagtttggacctgtctgcagaattt
ctcattctcagtgatgttcagaggaaggtgttgtacgtcatggagctgttacaggatcag
gaaaaaggctgtgccagcttcactgcagtttcagagtttctgcttacacaccctgtgctc
agcttcggcgtacaggatgtcgcccgcgccagactgcgccacacagaagtccttccccct
gatgaggaaagtgaaagcatgacgacagaaggaaaccagggaccctcggaatccaaatca
ggaatccagattaagctctactgtgtgcatacaaaatcactacaggatgtgcagatctgg
ttccagcccaatcagggggcctcttcctccctcttcatgccacagtctggatcacaggag
ggttttggtttttctgacccactggctgatctgaatgtggaggcaatgagctctgataaa
gagtctggtgatagtggatcacagaatgacctgactaagattctggctcttccaactcca
gctgacttcatgagtccagccccgtcagccttgcccaaactcatgaccccagatgccttc
atgacgcccagcgcctccatgcccgcttctcctggcagcagtgccagcagcctgaccata
gtcatggccatgagcagctcagatagcggtgcaagaggtggagatgatctggcccagagc
cctaaaatgtctgtcgaatgtggcaacagcagcagcttgactctgaatgccagcgcaggc
agtccaagatccaactctatcctcatctcaggccttggggaaaatatccaggctttctct
cccccacttgtgctctccacatccctcctgcgagaggcctctctgctctgtgaagctgct
ccttattctcacagacttccccttccttatttcccatctcctcttccacaggtttcccct
ccaaaccctcccctctccctggatctccaggccatagaccccatggttgtcccccaggcc
tctccgaccagagctcgctctccagatgtcatctcctctgcttctacggcaatgtccctg
gacatccccgagatcgcctcagagaccctgcagagggggctggccggtgccgctgctgac
tcaggccctgtcctgcattctgacagcatggcatcagccgcatcagtcctccacctgttg
tctccaagagcccggagcagtgctgagcacagtttgctgcctctggaattgggtgcagca
tctgtggatggagaacagagactcaataacacaccctccctgctggagacagctctgtcg
caggagaatgcagtagcggctggaggatcctgttcggacagcagcgtgaaccacacctgg
cccgcagcacctgatatcacacgagaaactcgcaacagcctgagagacaatggtttggga
gactgctctagggaggaaataaaggacagacacatttcttctccataccacaggcgcaca
tatcacctgactcagaacgacagtcaagatgcaagtgcagagcagagtgatcatgatgat
gaggttgccagtctggcctcctcctcgggaaattgtggccctcgctcctctcacagactt
cctgtgaaagactggaaaacatctccccgcagctcgcctaagctcaagaggaagagcaag
aaggatgaaggagagtcctcgcagtctaaacagattgagaaccagatgagcacagaggtg
caggatgagctcctacagatgttacggagccagcaaagggagatcgctgagctgagacag
aaccagctggagattttgcagagagtcaccagccacatggactctgtgcagagctccatc
atggctcacattgagcatgccatgttggctcagcaggaacaagaacagagaagaatggag
agaattctggctgaaggacaaagctgtaaccaacagttccaggaccagctggttcagcag
ctcgtccagactctgaacaacagtctctgcaaccggctagacaaagttttgcgtgaagaa
atgaagaagaccgtcccacaggccatatcgaagagtctagatcctgtgactggccagatg
agcagcaccatcactgccaagttaaccgcagtggaaggaacactgaaggaaaatgtcacc
aaagttgttaaatccaagaacactacggatgctatcggtcgtgctgctgcagaggccatg
cagggccccatccaggcggcctacaaagagaccttccagagcatcgtgctgcccgtgttt
gagagaggctgccagtccatgtttcagcagatcaatgacagcttcaaacagggaaccaac
gagtacatccaacagctggagacacacatcaagaacaggaaacagcgggaccaggatgca
cgggatcctgtgattggccagctgcaacagatgattgacacgctccagaattctcaagac
cagctggccaccactgtgacggccagcgtgtgctctgacgttcagcatcagctccacatg
atcgtgggaaatctgcaggactcaatcctgacgcaggtgcagcgcatagtgaagggagag
gtgagtctggccatgaaggagcagcaggccgctgtcacctccagcatcatgcaggccatg
cgctcggccgcaggaacacctgtaccctccgcacatctggactaccaggcccagcaggcc
agcatactgcagttactacagcagggccagctcaatgaggccttccaacaggctttatct
gcagcagacttgaatctggtgctatacgtgtgtgagaccattgactcccagcaagtgttc
ggccagcagccctgtccactccatcaggccgtccttctgtctctcatccagcagctctcc
accaacctgagcacacgcacagaactcaagatcagctatcttgaagatgctgtgatgaac
ctggaccatggagatccagtcaccagagaccacatgtctgcagtgctgtcccaggtacga
cagaagctgttacacttcctgcagcaggacgcccacagccctctttgcaagcgtgctcgg
cgcctcatgatgatgctgcagggcctggtcaatcactag
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integrated database retrieval system
