KEGG   Sinocyclocheilus grahami (golden-line barbel): 107598353
Entry
107598353         CDS       T04918                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
sgh  Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03013  Nucleocytoplasmic transport
sgh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107598353
  09122 Translation
   03013 Nucleocytoplasmic transport
    107598353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sgh03019]
    107598353
   03041 Spliceosome [BR:sgh03041]
    107598353
Messenger RNA biogenesis [BR:sgh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     107598353
Spliceosome [BR:sgh03041]
 Complex C
  Other components
   EJC/TREX
    107598353
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107598353
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_EML_2 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st ANAPC4_WD40 WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_Aladin Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 DSE1_N Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_NOL10_N Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st WD40_RFWD3 eIF2A RMC1_N Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_HPS5 NBCH_WD40 Tricorn_2nd Beta-prop_ACSF4 PAC11 TRM82_WD WDR90_beta-prop_4th B-prop_COPA_B_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_WDR41 ASA1 Peptidase_S9_N CFAP251_N Beta-prop_EIPR1 Beta-prop_NWD2_C Beta-prop_Nup120_160 PD40 Cytochrom_D1 WD_LRWD1 PROPPIN Beta-prop_NUP159_NUP214 YNCE Beta-prop_WDR11_1st Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 107598353
NCBI-ProteinID: XP_016145149
LinkDB
Position
Unknown
AA seq 266 aa
MKTIVKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMATISTKGENI
NICWSPDGQTIAVGNKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMFFLTNGNGC
INILSYPDLKLIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRL
DWPVRTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEIQCESPTFTVAWHPKRPLLAYA
CDDKEGKYDSNREAGTVKLFGLPNDS
NT seq 801 nt   +upstreamnt  +downstreamnt
atgaaaaccatagtgaaggaaaacaactacagagggcatggagacagtgtggatcagctg
tgctggcatcccaccaaccctgatctgttcgtcaccgcatcaggagacaagaccatccgc
atctgggacgtacggaccaccaaatgcatggccacgatcagcaccaaaggggagaatatc
aacatatgttggagtcctgatggtcagaccattgctgtcggtaacaaggatgatgttgtg
acttttattgatgccaaaacgcaccgtccccgtgccgaggagcagttcaagtttgaggtc
aatgagatctcctggaataatgacaatgacatgttcttcctgacaaacggaaacggatgt
attaatatattaagttatcctgatctcaagctcattcagtcaattaatgcccatccgtcc
aactgcatctgcattaaattcgatcccacgggcaagtattttgccaccggaagtgcggat
gcgctggtcagtctgtgggatgtggaggagctggtgtgtgtgcgctgcttctccagactc
gactggcctgtgcggacgcttagtttcagtcatgatgggaaaatgctggcgtcagcctct
gaggatcatttcattgacattgctgaagtagagacgggtgagaagctctgggagattcag
tgcgagtctccgacctttactgtagcgtggcatccgaagagacctctgctggcgtacgcc
tgcgacgataaagagggcaaatatgacagcaaccgagaggcagggaccgtcaagctcttt
ggacttcccaatgactcctga

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