Sinocyclocheilus grahami (golden-line barbel): 107598520
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Entry
107598520 CDS
T04918
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107598520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107598520
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107598520
mRNA degradation factors
5'-3' decay
Decapping complex
107598520
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
107598520
NCBI-ProteinID:
XP_016145377
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MFHFQSFDDDCTLEEEGLVEEDEIDQFNDDTFGAGAINDDWQEEHARLAELDEQVRDGVH
EAGDASSVDLPLAGGNAHSSALAQPSSSSRLYPDVDVRGGGDLAESLTRLILGSDPAIAG
VGTARSDRSHLPPMLSGQAPQPSALAEQSSLLLSYQQQQQLMRRGPAPLPQINSHSIWEN
SMGFGPVSSGLVTQKEDKTLMSIIKEVGLPNRPPGLSREEGRDLSERVPPPRSCSPVIGS
PPVRAVPIGTPPKQPMSQVHNQHNNHPLAVHVRATMPLRYPPPFPERLSPNNLLSIANSP
LSHPPFPAGVGPVLSHIQRAQLLNSQVGQFPRGPAPPLLQGGVGGFRPFFGQSGPRMGPH
GPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGDRRIRDPYSNLMTQREK
EWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEHTY
RPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLL
LEVQDFEKKFLQTPEHQRDALLEQHKTHTVQLYNSLREKEWDNRVSDEQCLMIMSVRKGK
RLISRLLPFLPQPHAAAVVMGIARNLPALAKKDKQDQVLCWLVEPVTAVIQSISSTSLTD
LLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRW
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttccattttcagtcttttgacgatgactgcaccctggaggaggaagggttggtagag
gaagatgaaattgaccagttcaatgatgacactttcggtgcgggggcaatcaatgatgat
tggcaggaggagcatgcccgcctcgcagagcttgatgagcaggtacgagacggagtgcat
gaagcgggtgacgcctcctccgttgacctccctctcgctggcggcaatgcccactcttcg
gccctcgctcaaccctcctcttcctcccggctttaccctgacgtagatgtacggggtggt
ggtgacctggcggagtcgctgactcggctcatcttgggctcggatcctgctattgctgga
gtgggcaccgccaggtcggaccgatctcaccttcctccaatgctgtccggccaggctcct
cagccctcggcattagctgaacagtcttctctgctgctgagctaccaacaacagcagcag
cttatgcgcagagggccagctcctcttccacagataaactctcacagtatttgggaaaac
agtatgggcttcggtcctgttagttctggactagtcactcaaaaagaggacaaaacgctt
atgtccattatcaaagaggtggggcttcctaatcggcctcctggactcagcagagaagaa
gggcgagatttgtctgaaagggttccacctcctcgctcctgctcacctgtgattggaagt
ccacctgtaagggctgtacctattggaacacctccgaaacagcccatgagtcaagtccac
aatcagcataataatcaccctttagccgttcacgtgagagccactatgccactgcgctac
ccacctcccttccctgagcgtctgtcccccaacaacctcctcagcatcgctaactcaccg
ttgtctcatcctccattccctgctggtgttggtcctgttctgtctcatatacagagagcc
caactgctcaactctcaggttggtcagttcccacgtggtccagctcccccattattacag
ggaggtgtcgggggtttcaggccattctttgggcagtctggtcctagaatgggtccccat
gggccacctcttggccacgcacccatccgacacaacaccacccacctccacccgcagcac
cgcaggatgctcaaccagaggatgcagaacagaggcttgggtgatcacgtcggagggaga
ggtgttggagacaggagaatcagagatccttacagcaatctgatgacacaaagagagaag
gaatgggtagcgaggattcaaatgatgcagcttcaaagcaccgatccgtatctggatgac
tactattaccagaattactatgaaaaaatggagaagcgtcaagagcgggaccgagacaac
aggaaggagcacaccaccaaactcatcactcctcaggtggctaaactggagcacacctat
cggccagtgcagtttgccggctcgttaggaaaactcactgtctccagtgtgaacaatcca
aggaaaatgattgatgccgtggtgaccactcgcagtgatgatgaggaaaaaagagaaaag
caagtgtggaacaaaagacggcaaatcctttatactgtggagaagatgtacagtctacta
ttagaagtgcaagactttgagaagaagttcttgcagacccctgagcaccaaagagatgcc
ctgctagaacagcataaaacccacacggtgcagctctacaactccctccgagaaaaagag
tgggacaaccgagtgagcgatgagcagtgcttgatgatcatgtctgtgcgtaaggggaaa
cgcctcatctccagactcctccccttcctgccacagccccatgctgctgctgttgtcatg
ggaatagccaggaaccttccagctctggccaagaaagacaaacaagaccaggtactgtgt
tggttggtagagccagtgacggcagtaatccagtccatatcgagtacctccctcactgat
ctcctccaggagctgcagggcagtgaaggacagcttccccttgtgctgcaaaataagttt
ggcgtgacgttgctctatctgattctaagtgaaggagagaggatgcagagctccgatccc
aactgtcagctcatggacgataaccgctggtga
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