Sinocyclocheilus grahami (golden-line barbel): 107599188
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Entry
107599188 CDS
T04918
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107599188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107599188
Enzymes [BR:
sgh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107599188
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107599188
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107599188
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_NXF1-5
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
107599188
NCBI-ProteinID:
XP_016146191
UniProt:
A0A672R1V9
LinkDB
All DBs
Position
Unknown
AA seq
549 aa
AA seq
DB search
MPKEKYDPPDPRRLYTIMSAEEVASGKKSHWTELEISGRVRSLSSSLWTLTHLTALHINN
NNLSRIPPEIAKLPHLVYLNLSSNKLRSLPAELGNMVTLRELLLNNNCLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLRERDQMMP
TAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITNCDADIISLQEVETEQ
YYTFFLETLKERGYDGFFCPKSRAKLMSEQERKHVDGCAVFFKTEKFALVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVKKDLFASGLKQPSEKQLLLVANAHMHWDPEY
SDVKLIQTMMFLSELKSIAERASGSINSASPTSDISSIPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFKELRYSDCLTNFSCNSKNGKPDGSITHSFQLKSAYEGNLMPYTNYTYDFK
GVIDYIFFSKTHMRVLGVLGPLETQWLKDNSITGCPHPHIPSDHFSLLAQLEYHPPLPPL
NGLHLPVHR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagacccacgcagattatataccatcatgtcagcc
gaggaagtggccagtgggaagaagtcacactggaccgagttggagatttctgggcgggtc
agaagtctaagcagctcactatggacgctgacccatctgactgctctccacatcaacaac
aacaacctgagccggattcctccagaaatcgcaaagctaccccatctcgtctacctaaac
ctgtcctccaacaaactgcgcagcctgccagcagaactcggcaacatggtgactctcagg
gaattgcttttgaacaacaattgtttacgagttttgccttatgaacttggtcggctgttc
cagttgcaaacccttggactcaaaggtaatccattgtcccaagatatactcaacctgtat
caggagccggatggaacaaggaaattattgaattacatgcttgacaatcttgcagtccac
ccagaacaactcccccaacgaccttggatcactttgagggagcgagaccaaatgatgccc
acagctgtgttcacagtaatgtgctacaacgtactgtgcgacaagtatgcaacaagacag
ttgtacggctactgtccctcatgggcccttaactgggagtacaggaagaagggcatcatg
gaggagatcactaactgtgatgctgacatcatcagcctgcaggaggtggaaacagagcag
tactacactttctttctggaaacactgaaagagcgtggatatgatggctttttctgtcca
aaatctcgtgccaaactcatgtcagaacaggagcggaaacatgtggatggctgtgctgtg
ttcttcaagaccgagaaatttgctctggtgcagaaacacacagtggagttcaatcaggtt
gccatggcaaactcagagggctcggaggttatgctaaacagagtcatgaccaaagataac
atcggagtagctgtcctgttggaagtgaagaaagacttgttcgctagtggtctaaagcag
ccttcagagaaacagctcctgctggtagctaacgcccacatgcactgggatccggagtac
tcggatgtgaagctcatccagactatgatgttcctgtctgagctaaagagcatcgctgag
agggcatcgggatccatcaactctgcatcacccacgtcagacatcagctccatccctatc
gtcctgtgcgctgacctcaactcgcttccagactctggtgtggtggagtatctgagtaat
ggtggagttgcagaaaatcacaaagactttaaggaactgcgttacagcgattgtctaacc
aacttcagttgcaacagcaaaaatggaaagcccgatggcagtatcacgcacagtttccag
ctgaagagtgcctatgaggggaatctcatgccctacaccaactacacttatgacttcaag
ggtgtgattgactacattttcttctctaagacacacatgcgtgttctgggtgttctgggt
ccactggagactcagtggctgaaggacaacagcataacgggctgcccccacccacacatc
ccttccgatcacttttccctcctggctcagctggagtaccacccgcccttaccccccctc
aacgggctgcatctgcctgtccacaggtag
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