Sinocyclocheilus grahami (golden-line barbel): 107599539
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Entry
107599539 CDS
T04918
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107599539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107599539
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107599539
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107599539
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
FlgM
Motif
Other DBs
NCBI-GeneID:
107599539
NCBI-ProteinID:
XP_016146648
UniProt:
A0A672PDS2
LinkDB
All DBs
Position
Unknown
AA seq
881 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWKKLYNAANANQKEKYESDLKKEIKKLQRLRD
QIKTWVASNEIKDKKQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRMIERHRYHI
RMLETILRMLDNDSVQVDAIHKIKDDVEYYLDSSQDPDFEENEFLYDDIDLEEIPQPLVA
TSPSGHTEDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDDKKRDRSTDSEISQSPIKN
GNPSSSLSSSSSLSSSSSGVSSNSFLISMATVANSISSASGSSSLLGTMGGSLQNSGSYS
SATQQSQQQHQPKISVSSLSTTNLASSNNSTLLPTPTSMSPPNTSTPGPLTPSSQSQPPV
GTGFSSSLGLGKGTSVTTGTNQMPGLVLSGMPASLNSMTGFLSGSTLAPYAQAAAAGCMG
SGLSASIGTNISSANSSGIVSSVGTNGSLGSTSLLGSGPGVLGLGSTQSAVEPLPLVAPS
SVGGALTSGSNVGVIGSNGGISGTGNAAGSAALPQPPSGLKQNGGTSYSAVVADSTSDST
LNSASQSSSLNSSTNQPNDSGSSLLGLMTLPPSSPSPSYSESKAGSCSLLNGPHSYTQAA
DTIKPQEPPSSLKSMAERVAQGSGLEEELSALHISSDIFPSSTAPSGTPAAPQSALSEVS
IPPSLGVCPLGPVPLSKEQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQV
PPPHADTVEFYQRLSTETLFFVFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEP
KTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaacttcaaggtgaaatagacagatgtttgaaaaaagttacagaa
ggggtagagcagtttgaggacatttggaaaaagctctataatgcagccaatgccaaccaa
aaagagaaatacgagtctgacctcaagaaagagataaaaaaattacagcgtcttcgtgac
cagattaagacttgggtcgcctccaatgagatcaaagacaaaaaacagctagtagagaat
cgcaaactcattgagacacaaatggagcggtttaagattgtggaacgggagaccaaaacg
aaagcgtactctaaagaaggactcggcctcgctcagaaagtcgatcctgcacagaaagag
aaagaagaggttggccagtggctaacgaacacgatagacacgttaaacatgcaagtggac
cagtttgagagcgaggttgaatcactttctgtccagaccaggaagaagaaaggagacaaa
gagaagcaggatcggatcgaggaactgaaacgaatgatcgagaggcaccggtatcacatc
cgcatgctagaaaccattcttagaatgctggacaatgactcggtacaggtggatgccatc
cacaagattaaagatgacgttgagtactatcttgattcctctcaggatcctgactttgag
gagaatgagtttctctatgatgacattgatttagaggagataccccagccactagttgcc
acatctccgtcaggtcacacagaggacgagatcttccagcactccagttccacaccgacc
tccacaacgtcgtcatctcccatacctccctctccggctacttgcactacgaattcggaa
gatgataagaaaagagatcgttcaacagacagtgaaatcagccagtcacctatcaagaat
ggaaatccatcttcatctctatcctcctcttcctcattgtcatcctcatcctcgggagtc
tcttcaaactcttttttgatctccatggcgactgtcgccaacagcataagctcggcatca
gggagcagcagcctcttaggcaccatgggcggctccctccagaactctggtagctatagt
tcagcaacacagcaatcccaacagcagcaccagcccaaaatctcagtctcctccctctcc
accaccaacttggcctcctccaacaacagtaccttactcccaacacccacctccatgtcg
ccgcccaacaccagcacaccgggccccctgacacccagctcgcagagccaacctccagtg
ggaacaggtttttcctccagtctaggccttgggaaggggacatcagtgactactggcaca
aaccagatgcccggtctggtcctttcagggatgccggcatccttgaacagcatgactggg
tttttgagcggatccaccctggcgccttatgcacaagcggctgccgcaggttgcatgggc
agcgggctgtcagcgtcgattggaactaatattagcagtgcaaactccagtggaatcgta
tcctcagtggggactaacggaagtctaggctctacaagcctcttgggctcagggcctggt
gttttgggtcttgggtccacacagtccgctgtggagcctttacctttggtggctcccagc
tctgtgggaggcgcactgacctcagggagcaatgtgggagttatcggaagcaatggagga
atatctgggacaggaaacgcagcaggaagtgctgcgctaccacagccacctagtgggctg
aaacaaaacggtggtacaagttatagtgctgtggtagcagacagcacatcagactccacc
ctcaacagtgccagccaatcctcatccttaaattcctcaacaaatcagcctaatgacagt
gggtctagccttctggggttaatgacactgccgcccagctcgccctcaccgtcatatagt
gagagtaaagcaggcagttgcagcctgctgaatggcccgcactcatacacacaggctgcc
gacaccatcaagcctcaggagcctccgagctctttaaagtcgatggcagagagggttgcc
cagggctcagggttagaagaggagctgtctgcactacatatctcaagtgatatatttccc
agctccacggccccttcaggcactcctgcagctcctcagtctgctctgtcggaggtgagc
atccccccatcattgggcgtgtgtccactgggccccgtccccctctccaaagagcaactc
taccagcaagccatgcaggagtccgcctggacgcacatgcctcacccgtccgactctgag
aggatcaggcagtacctgatgaggaacccctgcccaacactgccttttcaccaccaggtg
ccacctcctcacgctgacactgtggagttctaccagagactgtctacagagaccctcttc
ttcgtcttttactacttagagggtacaaaagcgcagtatctagcagccaaggccttgaaa
aaacagtcatggaggttccacaccaagtacatgatgtggttccagaggcacgaggagccc
aagaccatcactgatgagtttgagcaagggacatatatttactttgactatgagaaatgg
ggccagaggaaaaaggaaggatttacatttgagtacaggtaccttgaagaccgggacctc
cagtga
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