Sinocyclocheilus grahami (golden-line barbel): 107601316
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Entry
107601316 CDS
T04918
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgh03041
]
107601316 (ddx1)
03016 Transfer RNA biogenesis [BR:
sgh03016
]
107601316 (ddx1)
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107601316 (ddx1)
Spliceosome [BR:
sgh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107601316 (ddx1)
Transfer RNA biogenesis [BR:
sgh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107601316 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
107601316
NCBI-ProteinID:
XP_016148959
UniProt:
A0A672QET3
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRNAVKTGGAVFNKWQMNPYDRSPAFAIGADGLCCQSREFKEWH
GCRSTKAVTKGKYYYEVTCHDQGLCRVGWSTAQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYVDPDKGQMSFSKNGNDLGLAFEIPSQLKNQPFFASCVLKNAELKF
NFGDEPFKNQPKDGYVALNQASDGHVVKSSQTGSAKVSQVKSSSNAPRSLIIEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLSVLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLTAGYTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDRIWEKLLKNHIRTDEVHAKDDTRPGAN
TSEMWSEAIKILKGEYAIRAIKEHKMDQAIIFCRTKIDCDNLEQYFIKQGGGPDKKGHPF
SCVCLHGDRKPNERKYNLEQFKKQEVKFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKSCYNTRLKENGGCTIWYNEKELLA
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRTAGGGLYKGHVDILAPTVQELANLER
EAQTSFLHLSYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtttggcgaaatgggagtgatgcctgaaattgcgcaggcggtggaagaaatg
gactggctgttgccaacagacattcaggccgaatctatcccactgattctgggcggagga
gacgtgctcatggctgctgagactgggagcggaaaaactggagccttcagtattccagtc
atccagatagtctatgagacccttaaagaccagcaggaggggaagaagggacgcaatgct
gttaagacaggaggagcagttttcaataaatggcagatgaacccctatgacagaagtcct
gcatttgctattggtgcagatggcctgtgctgtcagagcagagagttcaaagagtggcat
ggctgtcgttccaccaaagcggtcacaaaagggaagtattattatgaagtaacctgtcac
gatcaagggctgtgcagggtgggctggtctactgcccaggcatcactggacttgggaacg
gacaaatatggatttggctttggaggaactggaaagaaatctcacaataagcagtttgat
agttatggagaggagttcactatgcatgacaccatcggatgctacgtagatccggataaa
ggccaaatgtcattctccaaaaatggtaatgatctgggtctggcttttgagatcccttca
cagctgaaaaaccagcccttctttgcttcctgtgtgctgaagaatgctgaactgaaattc
aactttggtgatgaacctttcaaaaaccaacctaaagatggatatgtggccctgaaccag
gcttcagacggtcatgtggtcaaatccagccagacaggcagtgctaaagtgagtcaggtc
aaatccagttctaacgcccccagatctctcatcattgagccgtctaaagagctagctgaa
caaaccctcaataatgtcaaccagttcaagaaatatgttgataaccccaaactgagggat
cttctgatcatcggaggagtggctgctaaagagcagctctccgttttagaaagcggcgtt
gatattgtggttgggaccccaggcagactggatgatctcatatccacaggaaagctggat
ctttcccaagtccgcttcctggtgctggatgagtgtgatggactcctcacagctggctac
actgacttcatcatgaggatctacaaccagatcccacaggttacttcagacggcaaaaga
ctgcaggtgatagtttgctctgctacactgcactcattcgatgtgaagaagctctcagag
aagatcatgcatttccccacatgggtggatctgaagggagaagattctgtaccagaaacg
gtccatcacgtggtggtgccagtcaacccaaaaaaagaccgaatttgggagaaactgttg
aaaaaccacattaggactgatgaagttcatgccaaggatgacacacgacctggagccaac
acttcagagatgtggtcagaggccattaagattctgaagggagagtatgcgatcagagcc
attaaggagcataagatggatcaggccatcatcttttgcaggacaaagatcgactgtgac
aatctggagcagtacttcatcaaacagggaggaggtccagacaagaaaggacacccgttc
tcttgtgtctgtcttcatggcgacaggaaaccaaatgagcgcaaatataacttggagcaa
ttcaagaaacaggaagtgaagtttctgatttgcacagatgtggctgctagaggaattgat
attcgtggcgttccttatgtgataaatgtaactctaccagatgagaagcagaactatgtt
catcgcattggaagagttggcagagcggacaggatgggtttggctatatctctggttgct
atggagaaagagaaggtgtggtaccatgtttgtgccagcagaggaaaaagctgctataac
accagactcaaagagaatggagggtgtactatttggtacaacgagaaagagttgttggca
gaaatcgaggaacatctgaaatgcaccattactcagtgtgaacctgacatcaaagtacct
gtggatgaatttgatggcaaagtgacttacgggcagcgcaggactgcggggggtggtctc
tataagggccatgtggatatactggccccgaccgtacaggaactagccaacctggagaga
gaagcacaaacgtccttccttcatctcagctatctacccaaccagctctttaaagccttc
tag
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