Sinocyclocheilus grahami (golden-line barbel): 107602140
Help
Entry
107602140 CDS
T04918
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sgh04147
]
107602140
00535 Proteoglycans [BR:
sgh00535
]
107602140
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107602140
Exosome [BR:
sgh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107602140
Proteoglycans [BR:
sgh00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107602140
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107602140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
107602140
NCBI-ProteinID:
XP_016150037
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MMSKLRFWLCLFIVVCLRIHHTHGWFWFDDSKENAKGAQTPAYLTTVRPTSPPRTEPPRT
TEESGVSLLQLIGDPPPDGVSKVFDDANNPGYVFDQRSNVGQSAAAHLPNPFFHDFSLIF
NIKPTSSKPGVIFSITDPTQNIMYVGVKLSAVEKGKQYIIFYYTEPDSQSSYEAARFSVP
SMVNTWTRFSISVLNERVSLYFNCDSDPQVISFERSPDDMDLDAGAGVFVGHASGADPDK
FLGVIGDIRMLKDPGAAERHCEEDEDDFDANLQGSGDYGASGDGEGPPSVQPTPPSSRPI
QQPPVTSRPLVEKQQIGSVDSSWQISGSYGDSRQTSGSYGGSRKTSGSYGDSRKTSVSHG
GSRQTSGSYGDSEQTSGSYGYSQTNSGSYGDSRQSSGSYDGSRQTSGSYGDSRQTLDSVG
VSRQTSGSYDDSRQASNSLSTSGSAGDGIRYSVESRLGPAGSTGGSLMKRSKSLKWTWNF
WIEILSRNSHIRLTSTYGLPGPSGADGKPGLPGPKGEKGDAGELGLPGPVGEKVSLRNMC
TSYLYDLLSYSTSSFSKAAGWQQNSYFPSYLYDLLSYSTSSFSKAAGWQYDETGGPGPQD
GAGFTGQAGFPGPMGPKGDRGEPGSPGYGIKGEKGESGLILGPDGNPHYLGGLTGQKGER
GLSGPVGPPGPAGPFGLKGEFGMPGRPGRPGVNGYKGEKGEPGSGSGYDYPGPPGPPGPP
GPPGPAVPLDRFGRYEDYSRHHPAMKGEKGDQGAAGVPGSPGFSSNIDIYALKNEMKGEH
GEPGLKGEKGEPGGGFYDPRFGAVQGPPGNPGLPGPKGDSISGPPGPQGPPGPPGVGYDG
RPGNPGPPGAPGPPGSSSLPGAYRPQLSIPGPPGPPGPPGIPGTGSGVAFLRSYDIMMAT
ARRQTEGALIYILDRNDLYLRVRDGVRQVMLGDYKPFYGGLDNEVAAVQPPPVVHYSQDH
TANNGAEQISPPHPPIEFPRREPENRNPNAPDSRYPDQRYPPYTDNKYTDPVQPHRYPVQ
PERNPITPARHPSPPVNQPEGHVHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQARAM
GLKGTFRAFLSSKLQDLYSIVRKSDRETLPIVNLKDQVLFRSWESLFSDSESRMKDNAPI
YSFDGRDVLRDSAWPEKMIWHGSSGRGHRQTDNYCETWRAGDRAVTGLASSLQAGQLLQQ
TSSSCSSSYIVLCIENSYMTQSKK
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctaagctcaggttttggctgtgcctctttattgtggtgtgcttgaggatacac
cacacgcatggctggttctggttcgatgactcgaaagaaaatgcaaagggcgcacagaca
ccggcttacctgacaactgtaaggcccacatcacccccaaggacagaaccgcccagaaca
acagaagaaagtggagtgtcgttgttgcagttaattggtgatcctccacctgatggcgtc
tccaaagtatttgacgatgctaacaaccctggctatgtgttcgaccaaaggtccaatgtg
ggtcagtcagctgcggctcacctgcccaaccctttcttccatgacttctcgctcatcttc
aacataaaacccacgtcctccaagcctggagtcatcttctccatcactgacccaactcag
aacatcatgtatgttggtgtgaagctgtcagcggtggagaagggcaagcagtatatcatc
ttctactacactgagcctgactcacagagctcatacgaggcggccagattctctgtgccc
tccatggtgaacacctggacccggttttccatcagtgttttgaatgagcgtgtttccctc
tacttcaactgtgactcagatcctcaggtcatcagttttgagcggtctccagatgatatg
gacctggatgccggggcgggagtgtttgttggtcatgccagtggagcagaccctgataag
tttttgggtgttatcggcgatataaggatgttgaaagaccctggggcagctgaacgacac
tgtgaagaagatgaggatgactttgatgcgaatctacagggatcaggtgattacggagca
agtggagatggagagggaccaccatcggtccagccgacccctccctcctctcggccgatc
cagcagccgccggtgaccagcagaccgcttgttgagaagcagcagataggctcagtcgat
tcttcttggcaaatttctggctcctacggtgattctcgacaaacatccggctcatatggc
ggttctcgaaaaacatctggctcatatggggattcccgaaaaacatctgtctcccacggt
ggttctcggcaaacatctggctcatacggtgattctgaacaaacttctggttcgtatggt
tattcccaaacaaactctggatcgtatggtgattctcgacaatcatcgggctcatatgat
ggttctcgacaaacttctggctcatatggtgactctcgacaaacgcttgactcagttggt
gttagcaggcaaacttcagggtcatatgatgattctagacaagcttcaaactctttaagt
acatcaggctcagctggcgatggcatacggtattctgtggagtccaggctcggtcctgca
ggttcaacaggtgggtcgctaatgaagagatcaaaatctctcaaatggacatggaatttc
tggatagaaattctcagcagaaattctcatatccgcctcacaagcacatacggacttcca
ggtccatcaggtgctgatggaaaaccaggcttacctggcccaaaaggagaaaagggtgat
gccggtgagctgggcctacctggacctgtgggagagaaggtcagtttgcgtaatatgtgc
acctcctatctctatgatcttctctcctactctacctcatccttctctaaagctgcaggg
tggcagcaaaactcctactttcccagctatctctatgatcttctctcctactctacctca
tccttctctaaagctgcagggtggcagtatgatgaaactggaggaccagggcctcaggat
ggggctggttttactggtcaagcaggattcccaggcccaatgggaccaaagggtgacaga
ggagaacctggttcaccaggctatggcattaagggggagaaaggagaatccggactaatt
cttggacctgatggaaacccacattaccttggtggactgacaggccaaaagggtgagaga
gggctttctggaccagtcggacctcctggtccagctggcccttttggtttgaaaggtgaa
tttggaatgccaggcagacccggccgtccaggtgtgaacggatacaaaggagagaaggga
gaaccagggtcaggctctggatatgactacccaggtcctcctggtcccccaggaccccct
ggtccccctggacctgctgtgcccttggacagattcggtagatatgaagattattcgagg
caccatccagctatgaaaggagaaaaaggagaccagggagctgctggtgttccaggatca
ccaggtttttcctctaacattgatatatatgccctaaagaatgagatgaagggggagcat
ggtgagcccggtcttaaaggagagaaaggagagccaggaggtggattttatgaccctcgt
tttggagctgtacaaggaccaccaggaaaccctggacttcctggacctaaaggagactca
atcagcggtccccctggaccgcagggcccaccaggacctcctggagttggttatgatggt
cgtccaggaaacccaggacctcctggagcccctggtcctccagggtcatcgtcattgcca
ggagcctacagaccacaactcagtattcccggacctccaggtccccctggcccaccagga
attcctggcacaggatctggggtggctttcctgaggtcttatgacataatgatggctaca
gcacgcagacagactgaaggtgcattgatttacattttggacagaaacgatctctacctc
agagttcgggatggtgttagacaagtgatgcttggggattataaacccttctatggaggg
ctggacaatgaagtggcagcggtccagccgccccctgttgttcactattcccaagaccac
acagctaacaatggagcagagcagatttctccaccgcacccgccgatcgagtttccaagg
agggagccagagaataggaaccccaatgcacctgactcccgttacccagatcaacgatac
ccaccctacaccgataacaagtacactgatcctgtacaaccacacagataccctgtacaa
ccagagaggaaccccatcactccagcccgccaccccagcccccctgtcaatcaaccagaa
ggacacgtccacacttccggaccagggttgcatcttattgccctgaattctccacaagtg
ggcaacatgagaggcattcgtggggcagacttcctgtgcttccagcaggctcgcgctatg
ggcctgaagggaacattcagagccttcctgtcttccaaacttcaggatctctacagtatc
gttcgcaaatctgacagagagacattaccgattgttaacctcaaggatcaagtccttttc
agaagctgggagtctctcttcagtgactcagagagcaggatgaaggacaatgctcctatc
tactcgtttgatggcagagatgtcctgcgggacagtgcctggccagagaagatgatctgg
catgggtccagtggcaggggtcacaggcagacggataactactgtgagacgtggagggcc
ggagaccgtgcggtgacaggcttggcctcatctctgcaggctggccagctcctccagcag
acctccagcagctgctccagttcctacatcgtgctgtgcatcgagaacagctacatgaca
caatcaaagaaataa
DBGET
integrated database retrieval system
