Sphingopyxis granuli: SGRAN_2217
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Entry
SGRAN_2217 CDS
T04372
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi03030
DNA replication
sgi03430
Mismatch repair
sgi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SGRAN_2217 (holB)
03430 Mismatch repair
SGRAN_2217 (holB)
03440 Homologous recombination
SGRAN_2217 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgi03032
]
SGRAN_2217 (holB)
03400 DNA repair and recombination proteins [BR:
sgi03400
]
SGRAN_2217 (holB)
Enzymes [BR:
sgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SGRAN_2217 (holB)
DNA replication proteins [BR:
sgi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SGRAN_2217 (holB)
DNA repair and recombination proteins [BR:
sgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SGRAN_2217 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA_16
AAA
Mg_chelatase
AAA_25
APP1_cat
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMG74585
UniProt:
A0AA86GM07
LinkDB
All DBs
Position
complement(2405166..2406152)
Genome browser
AA seq
328 aa
AA seq
DB search
MIGHQEAEKAIIDAWSAGCLHHAWLLAGPQGIGKAAFASRVARFLATHDSGGQGGTGEQG
GAIALDDPGDGAAGRLVEAGNHPEIVRLERQPKEKGKELARNITIDQVRTMIRRLYLSLS
LGHWRVVIIDAVDDLETDGANALLKTLEEPPARTVFLLVSHSPGRLLPTIRSRCRTLRFQ
PLDPDVMTAWLHELRPMLDRAEARAIVAASGGLPGKALALIDSDVAAMEKKLLAIVAGGD
PDNRLREALAREVGGASNRARLELVIDIVPGLLARLARERPVSEIAPVLAGWDRVQRTVR
DAVRGSYDGAMVGFEIGNCLAELAPREG
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggcatcaggaggccgagaaggccatcatcgacgcgtggagcgccgggtgcctg
catcatgcgtggctgctcgcggggccgcagggcatcggcaaggcggcctttgcatcgcgt
gtcgcgcgctttctggccacccacgattccggcgggcagggggggaccggcgagcagggc
ggggcgatcgcgctcgacgaccccggcgacggtgcggcagggcggctggtcgaggcgggc
aaccatcccgagatcgtccggctggaacgccagcccaaggaaaagggcaaggagctcgcc
cgcaacatcaccatcgaccaggtgcgcacgatgatccggcgcctgtatctgtcgctatcg
ctcggccactggcgcgtcgtgatcatcgacgcggtcgacgacctcgagaccgacggcgcc
aatgcgctgctcaagacgctggaagagccgccggcgcggacggtgttcctgctggtcagt
cattcgccggggcgcttgctgccgacgatccggtcgcggtgccggaccctgcgttttcaa
ccgcttgaccctgacgtcatgacggcgtggctgcacgaattgcgcccgatgctcgaccgt
gcagaggcgcgcgcgatcgtcgcggcgtcgggcgggctgccgggcaaggcgctggcgctg
atcgacagcgatgtcgccgcgatggagaagaagctgctcgcgatcgtggcgggcggcgat
cccgacaaccggctgcgcgaggcgctggcgcgcgaggtcgggggggcgagcaatcgggcg
cggctggaactggtgatcgacatcgtgccgggtctgctcgcgcggcttgcccgcgagcgc
ccggtgagcgagatcgcgccggtgctcgccggatgggaccgcgtgcagcgcaccgtccgc
gacgcggtgcgcggatcctacgacggggcgatggtcgggttcgagatcggcaattgtctg
gcggaactggcgccgcgtgaagggtga
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