Sphingopyxis granuli: SGRAN_3079
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Entry
SGRAN_3079 CDS
T04372
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SGRAN_3079 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgi03021
]
SGRAN_3079 (rpoC)
03400 DNA repair and recombination proteins [BR:
sgi03400
]
SGRAN_3079 (rpoC)
Enzymes [BR:
sgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SGRAN_3079 (rpoC)
Transcription machinery [BR:
sgi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SGRAN_3079 (rpoC)
DNA repair and recombination proteins [BR:
sgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SGRAN_3079 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMG75426
UniProt:
A0AA86L404
LinkDB
All DBs
Position
complement(3377724..3382007)
Genome browser
AA seq
1427 aa
AA seq
DB search
MNQLTNFMNPVAKPETFDMIKIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVLEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAIRVLLENLDLEQERADLMEELATTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEREGEPGEGMLLADMAEVHQALYT
GAVTLHTRVVSRVPQTDEQGNSYLKRFETTPGRMLIGECLPKSHTVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKETVLFADAIMALGFRHAFRAGISFGKDDMIIPAAKEKLVDETRALV
KDFEQQYQDGLITQQEKYNKAIDAWSQCGDKVANAMMDEIRATPKLDDGRLAPINSIYMM
AHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVIEEDCGTDRGMEMRAIVQGGSVIASLGERILGRTTL
EDVTDSDGTLLAPVGTLLDEATVAKIEEAEVQAVKIRSPLVCEAALGVCAKCYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNLEAISDGTIEYRDMETIV
DQRGRRLALSRSGEIAVIDPEGRERATHRLPYGAQIMHKDGEKVKKGDRIAEWDPFTMPL
ITEKNGVVKYQDLIDGKTLAEQVDEATGIAQRVVIEYRATGRGKKEELQPRLTLLDETSG
EAARYLLAVGTMISVDDGQDVKAGDVLARVTREASKTRDITGGLPRVAELFEARIPKDNS
VIAKISGRIEFVKDYKAKRKIAIVPEEGDPVEYLIPKSKVLEVQEGDYVKRGDALISGSP
NPHDILDVMGVEALAEFLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTLL
PGEQLDYLEMMEYNAKLPKNGKPAEGRPVLLGITKASLQTRSFVSAASFQETTRVLTEAS
VQGKVDSLMGLKENVIVGRLIPAGTGAAMNRVRVTASSKDAALRAAMRAANEAHLVAPQT
AAEEHAAELAQGPEAALGDDPLGKVQGEDFTTDDVMVEDRPEGGEEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcttaccaacttcatgaacccggtggcgaagcccgaaaccttcgacatgatc
aagatcggcatcgccagccccgagcgcatccgctcgtggtcgttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagcccgaacgcgacggcctgttctgcgcacgc
atcttcggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaaatac
aagggcatcgtgtgcgagaagtgcggcgtcgaggtcacggtgaccaaggtccgccgcgag
cgcatgggtcatatcgaactggccgcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtatcggcctgctgcttgacatgcagctcaagcagcttgagcgtgtcctctat
ttcgaggcctatatcgtcctcgaacctggcctgacgccgctggagaagttccagctcctc
accgaggatgaactgctcgacgcgcaggacgaatatggcgaggacgcattcagtgccggg
atcggcgccgaggccatccgcgtgctgctcgagaatctcgatctcgaacaggaacgcgcc
gacctgatggaagagctggcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cgtctgaaggtcgtcgagagcttcatcgaatcgggcaaccgtcccgaatggatgattctg
gaagtcatcccggtgatcccgcccgaactgcgcccgctggtgccgctcgacggcggccgc
ttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgcctg
aaaaggctgatggaactgcgcgccccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgtcgacgcattattcgacaacggccgccgcggccgcacgatcaccggcgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccc
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccc
ttcatctacgcgcgcctcgacgccaagggtctgtcgatgaccctgaagcaggcgaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctcgacgaggtgatccgggagcat
ccggtgttgctgaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagcttcacccgctggtgtgcgctgcgttcaacgcc
gacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctgtcccccgcgaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctcggcctctattatctgtcgatggagcgcgagggc
gagccgggcgagggcatgctgctcgccgacatggccgaggtgcaccaggcgctctatacg
ggcgcggtgacgctgcacacgcgtgtcgtcagccgcgtcccgcagaccgacgagcagggc
aacagctacctcaagcggttcgagaccaccccgggccgcatgctgatcggcgaatgcctg
ccgaagtcgcacaccgtgcccttcgacgtagtcaaccgcctcctcaccaagaaggagatc
ggcgacgtcatcgaccaggtctatcgccacaccgggcagaaggagacggtgctgttcgcc
gacgcgatcatggcgctgggcttccgtcacgctttccgtgccggcatctcgttcggcaag
gatgacatgatcatcccggcggccaaggagaagctggtcgacgagacgcgcgccctggtg
aaggatttcgagcagcagtatcaggacggtctgatcacgcagcaggaaaaatacaacaag
gcgatcgacgcctggtcgcagtgcggcgacaaggtcgcgaacgcgatgatggacgagatt
cgcgccacgccgaagctcgacgacggccgcctcgcgccgatcaactcgatctacatgatg
gcgcactcgggtgcccgcggttcgcaggcgcagatgaagcagcttgccggcatgcgcggg
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtcctcgaatatttcaactcgacccacggcgcccgcaagggcctggcggac
acggcgctcaagacggcgaactcgggctatctgacccgccgtctcgtcgacgtgtcgcag
gattgcgtggtgatcgaggaggattgcggcaccgatcgcggtatggaaatgcgtgcgatc
gtgcagggcggatcggtgatcgcgtcgctcggcgagcgcatcctcggccgcacgacgctc
gaggacgtcaccgattccgacggtacgctgcttgcgccggtcggaacgctgctcgacgaa
gccacggtcgcgaagatcgaggaggccgaggttcaggcggtcaagatccgcagcccgctc
gtttgcgaagcggcactgggcgtctgcgccaaatgctatggccgcgacctcgcgcgcggc
acgccggtgaacatcggtgaagcggtcggcgtcatcgcggcgcagtcgatcggcgagccg
ggcacgcagctcacgatgcgaaccttccacatcggcggcgcggcgcaggtcaacgaacag
tcgaacctggaggcgatctccgacggcacgatcgaatatcgcgacatggaaacgatcgtc
gatcagcgcggccgccgtctggcgctgtcgcgttcgggcgagatcgcggtcatcgacccc
gagggccgcgagcgcgcgacacatcgtctgccctatggtgcgcagatcatgcacaaggat
ggcgaaaaggtgaagaagggcgaccggatcgccgaatgggatccgttcaccatgccgctg
atcaccgaaaagaacggtgtcgtgaagtatcaggacctgatcgacggcaagacgctggcc
gaacaggtcgacgaggcgaccggcatcgcgcagcgcgtcgtcatcgaatatcgcgccacg
ggccgcggcaagaaggaagagctccagccgcgactgaccctgctcgacgagacgagcggc
gaagcggcgcgctacctgctcgcggtcggcacgatgatctcggtcgacgacgggcaggat
gtgaaggcgggcgacgtgctggcgcgtgtcacgcgcgaagcgtcgaagacgcgcgacatc
accggcggtctgccgcgcgtcgccgaactgttcgaggcgcgtatccccaaggataattcg
gtgattgccaagatcagcggccgcatcgaattcgtcaaggactacaaggcgaagcgcaag
atcgcgatcgttccggaagagggcgatccggtcgaatatctgatccccaagtcgaaggtg
ctcgaggtgcaggaaggcgactatgtgaagcgcggcgacgcgctgatcagcggctcgccc
aacccgcacgacatcctcgatgtcatgggggtcgaggcgctggccgagttcctcgtcgcg
gagatccaggaagtctatcgactccagggcgtgaagatcaacgacaagcacatcgaggtg
atcgtccgccagatgctgcagaaggtcgagatcaccgacggcggcgacaccacgctgctg
ccgggcgagcagctcgattatctggagatgatggaatataacgccaagctgcccaagaac
ggcaagcctgccgagggtcgcccggtcctcctcggcatcaccaaggcgagcctgcagacg
cgcagcttcgtctcggcggcgtccttccaggaaacgacccgcgttctcaccgaagcatcg
gtgcagggcaaggtcgactcgctgatgggtctcaaggagaatgtcatcgtcggccgtctg
atcccggccggcaccggtgcggcgatgaaccgcgtccgcgtcaccgcttcgtcgaaggac
gccgcgctgcgcgccgccatgcgcgccgcgaacgaggcgcacctcgtcgcgccgcagacg
gcggccgaggagcatgcggccgaactggcgcagggccccgaagctgcgctgggcgacgat
ccgctcggcaaggtgcagggcgaggacttcaccaccgatgacgtgatggtcgaggaccgt
cccgaaggcggcgaggaagaataa
DBGET
integrated database retrieval system
