Sphingopyxis granuli: SGRAN_3316
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Entry
SGRAN_3316 CDS
T04372
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SGRAN_3316 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgi03021
]
SGRAN_3316 (rpoA)
03400 DNA repair and recombination proteins [BR:
sgi03400
]
SGRAN_3316 (rpoA)
Enzymes [BR:
sgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SGRAN_3316 (rpoA)
Transcription machinery [BR:
sgi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SGRAN_3316 (rpoA)
DNA repair and recombination proteins [BR:
sgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SGRAN_3316 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF211
IDH
TmoB
Motif
Other DBs
NCBI-ProteinID:
AMG75659
UniProt:
A0AA86GM94
LinkDB
All DBs
Position
3634126..3635184
Genome browser
AA seq
352 aa
AA seq
DB search
MTVNIRNWQELKKPSNLEIKAGSDGKSKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALRMEGEGPKRLQLSATGPAVVKAGDI
MVSGDIKVMNPDHVVCHLDDGATLNMELVADTGKGYVPATANRPADAPIGLIPVDSLYSP
VRQVAYKVENARIGQELDYDKLNLTVETDGTVTPEDAVAYAARILQDQLQVFVHFEEAMN
DSGLIGMAAPSQASEESDVNQLNRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaatatccggaactggcaggaattgaagaagcccagcaacctggaaatcaag
gccggcagcgacggcaagagcaaggcgaccttcgtcgccgagccgctcgagcgcggcttc
ggcctgacgctgggcaacgcgctgcgccgcgtgctgctgtcgtcgctccagggcgcggcg
atcacgtcgatcaagatcgagaacgtcctgcacgaattctcgagccttgccggcgtgcgc
gaggacgtcaccgacatcgtcctcaacgtgaagcagatcgcgctcaggatggaaggcgaa
ggcccgaagcggcttcagctttcggcgaccggtcccgccgtcgttaaggcgggcgacatc
atggtgtctggcgacatcaaggtgatgaaccccgaccatgtcgtctgccatctcgacgac
ggcgcgacgctgaacatggaactcgtcgccgacaccggcaagggctatgtccccgcgacc
gccaaccgtccggccgacgcgccgatcggcctgatcccggtcgactcgctctactcgccg
gtgcgccaggtcgcctacaaggtcgagaacgcccgcatcgggcaggaactcgactatgac
aagctcaacctgaccgtcgagaccgacggcacggtgacgcccgaggacgcggtcgcctat
gcggcgcgcatcctgcaggatcagctccaggtcttcgtccacttcgaagaggcgatgaac
gacagcggcctgatcggcatggcggcgccgtcgcaggcgagcgaggagtcggacgtcaac
cagctcaaccgcttcctgctcaagaaggtcgacgaactcgaactgtcggtccgcagcgcc
aactgcctcaagaacgacaacatcatctacatcggcgacctggtccagaagaccgaggcc
gagatgctccgcacgccgaacttcggccgcaagtcgctcaacgagatcaaggaagtgctc
tcgtcgatgggcctgcgcctcggcatggacatccccggctggccgccggagaatatcgag
gaaatggccaagaagctcgaacaggagctgttgggctga
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