Sphingopyxis granuli: SGRAN_3389
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Entry
SGRAN_3389 CDS
T04372
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sgi
Sphingopyxis granuli
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgi03016
]
SGRAN_3389 (truB)
Enzymes [BR:
sgi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SGRAN_3389 (truB)
Transfer RNA biogenesis [BR:
sgi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SGRAN_3389 (truB)
Prokaryotic type
SGRAN_3389 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
AMG75732
UniProt:
A0AA86GME8
LinkDB
All DBs
Position
complement(3703488..3704444)
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AA seq
318 aa
AA seq
DB search
MNGWIILDKPIGLGSTQAVAAVKRVCRERGLGRVKVGHGGTLDPLASGVLPIALGEATKL
CGRMLDASKVYDFTIAFGTETAGLDAEGEVVATSDVRPTLADIEAVLPRFTGPIEQVPPA
FSAIKVDGQRAYDLARKGAAVDMKARAVIIYNLRHAGLDPASVRSVREEWLPDQVRGDEM
GEGLNSITLSAHVSKGTYIRSLARDIARAAGTVGHVAMLRRTRAGPFTLAQAISLDKLNA
FGQGAAQSDVILPLEAGLVDIPALDLSPEAAGAIRQGRVWTGESAHDGLYWGRDSEKRPV
ALIEALAGRLKVVRGFNL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaacggctggatcatcctcgacaagcccatcggcctcggctcgacccaggcggtcgcc
gcggtcaagcgcgtgtgccgcgaacgcgggctcggcagggttaaggtggggcatggcggg
acgctcgacccgctggcgtcgggggtgctgccgatcgcgctcggcgaggcgaccaagctg
tgcgggcggatgctcgatgcgagcaaggtctatgatttcaccatcgcgttcggaaccgag
accgcgggcctcgatgccgagggtgaggtcgtcgcgacgagcgacgtccggccgacgctg
gcggacatcgaagcggtgctgccacgcttcaccgggccgatcgagcaggtgccgccggcc
ttttcggcgatcaaggtggacgggcagcgcgcctatgacctggcccgcaagggcgcggcg
gtcgacatgaaggcgcgcgcggtgatcatctacaacctgcgtcatgccggacttgatccg
gcatccgttcgttcggtgcgagaggaatggctcccggatcaagtccggggtgacgagatg
ggggaggggttgaactccatcactctcagcgcgcatgtgtcgaagggcacctatatccgc
agcctcgcgcgcgacatcgctcgcgcggccggcaccgtcgggcatgtcgccatgctgcgc
cgtacccgggcggggccgttcacgctggcgcaggcgatttcgctggacaaattgaacgct
ttcggtcaaggcgccgcgcaatcagatgtgattctgccgctcgaggcagggctggtcgac
atcccggctctggacctctccccggaagcggcaggggcgatccgccagggtcgtgtctgg
accggggaaagcgcgcacgacgggctctattggggacgggacagcgagaagcggcctgtc
gcgttgatagaggctttggccggaaggctgaaggtcgtgcggggcttcaatctgtaa
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