Sphingopyxis granuli: SGRAN_3963
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Entry
SGRAN_3963 CDS
T04372
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sgi
Sphingopyxis granuli
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgi03016
]
SGRAN_3963
Enzymes [BR:
sgi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SGRAN_3963
Transfer RNA biogenesis [BR:
sgi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SGRAN_3963
BRITE hierarchy
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AMG76293
UniProt:
A0AA86GYQ4
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All DBs
Position
complement(4347897..4348514)
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AA seq
205 aa
AA seq
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MSVYFHEEDLPEGVLGPGAVAIDTETMGLNPLRDRLCLVQISDGSGDEHLVRFGPGSAYD
APVLKAILTDPGRLKLFHFARFDIAALQHALGVVTAPVYCTKIASKLVRTYTDRHGLKEL
VRELLGQEVSKQQQSSDWGAAELTEAQRDYAASDVRFLHAMKTVLDARLAREGRTELAQA
CFDFLPARAALDLAGWPEVDIFAHT
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatatttccacgaagaagacctgcccgaaggcgtgctggggcccggcgccgtc
gcgatcgataccgaaacgatggggctcaacccgctgcgcgaccggctgtgcctcgtccag
atcagcgacggttcgggcgacgagcatctcgtccgcttcggccccggcagcgcctatgac
gcgccggtgctgaaggcgatactgaccgaccccggccgcctgaagctctttcatttcgcg
cgtttcgacatcgccgcgctgcagcatgcgctgggggtcgtcaccgcgcccgtctattgc
accaagatcgcctcgaagctggtgcgcacctacaccgaccgccacgggctcaaggaactg
gtgcgcgaactgctggggcaggaagtgtcgaagcagcagcagtcgagcgactggggcgcc
gccgaactgaccgaggcgcagcgcgactatgccgcgagcgacgtgcgctttctccacgcg
atgaagaccgtgctcgacgcgcggctcgcgcgtgaggggcgtaccgaactggcgcaggcc
tgtttcgacttcctgccggcgcgcgcggcgctcgacctcgcgggctggcccgaggtcgac
atcttcgcgcatacgtga
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