Sphingopyxis granuli: SGRAN_4004
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Entry
SGRAN_4004 CDS
T04372
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi03410
Base excision repair
sgi03430
Mismatch repair
sgi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SGRAN_4004 (recJ)
03430 Mismatch repair
SGRAN_4004 (recJ)
03440 Homologous recombination
SGRAN_4004 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgi03400
]
SGRAN_4004 (recJ)
DNA repair and recombination proteins [BR:
sgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SGRAN_4004 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SGRAN_4004 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SGRAN_4004 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AMG76333
UniProt:
A0AA86GNM7
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All DBs
Position
4403556..4405325
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AA seq
589 aa
AA seq
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MTDTALGIAQSILGQPWRWRRTSAQMGGESLAPDDLVTQLLLARGVPRDDIERQRAPTLR
AFMPDPSLFRDMDAAAARLADAVEAREAVTVFGDYDVDGATSAALLVRLLRALDVPVGAY
IPDRLMEGYGPSGAALVRIGAAGSRLVVTVDCGAQAFDAIAEAKAAGVEVIVVDHHQCAT
TLPQAFAVVNPNRLDEAPDAALHGNLAAVGVAFLLGAALLRTLRARGFFGSRPEPALIDL
LDLVALGTVADVARLTGFNRALVTQGLKVMARRGNIGLAALMDAARLTKPPTASDMGFAL
GPRINAGGRVGKSDLGVRLLTTSDPQEAADIAQELNHLNDERRAIEAAVLDQAIEASIAC
ANAPVALVAASGWHPGVIGIVAGRLKERLHRPAIVVALGDDGIGKGSGRSIAGVDLGAAV
LAAKETGLLVAGGGHAMAAGLTVAADRIDALGAFLSDRLAADVERASGDKALLIDAVLAP
RGISPLWCEAIDSAGPYGAGWPAPRVATGPVRIVEAGIVGTDHLRLIVAGDDGARFKAIA
FRSAEGLLGQTLLHARGGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccgcgctcggcatcgcgcagtccatcctcggccagccatggcgctggcgg
cggaccagcgcacagatgggcggcgaaagcctcgcacccgacgatctcgtcacccagctc
ctgctcgcgcgcggggtgccgcgcgacgatatcgagcgccagcgggcgccgacattgcgc
gccttcatgcccgatccgtcgttgttccgcgacatggacgccgccgccgcgcggctcgcc
gacgcggtcgaggcgcgcgaggcggtcaccgtcttcggcgactatgatgtcgacggcgcg
acctcggcggcgctgctcgtccgcctgctgcgcgcgctcgacgtccccgtcggcgcctat
atccccgaccggctgatggaaggctatggcccctcgggcgccgcgctggtccggatcggc
gcggccggatcgcggctcgtcgtcaccgtcgattgcggcgcgcaggccttcgacgcgatt
gccgaggccaaggccgcaggggtcgaggtgatagtcgtcgaccatcaccaatgcgcgacg
acgctgccgcaggccttcgccgtcgtgaaccccaaccggctcgacgaggcgcccgacgcg
gcactccacggcaatctcgccgcggtcggggtcgccttcctgctcggcgcggcgctgctc
cgcacgcttcgcgcgcgcggcttcttcggatcgcggcccgaacccgcgctgatcgacctg
ctcgatctcgtcgcgctcggcaccgtcgccgacgtcgcgcggctgaccggctttaaccgc
gcgctggtgacgcagggactgaaggtaatggcacggcgcggcaacatcggtctcgcggcg
ctgatggacgcggcgcggctcaccaaacccccgaccgcgagcgatatgggcttcgcgctc
ggcccgcgcatcaacgccggcggccgcgtcggcaaatccgacctcggcgtgcgactgctc
accacctcggacccgcaggaagccgccgatatcgcgcaggaactgaatcacctgaacgac
gagcgccgcgcgatcgaggcggcagtgctcgaccaggcgatcgaggcgagcatcgcctgt
gccaacgcccccgtcgcgctcgtcgccgcatcgggctggcaccccggcgtgatcggcatc
gtcgcggggcggctcaaggaacggctgcaccgccccgcgatcgtcgtcgcgctgggcgac
gacggcatcggcaaggggtcgggccgctcgatcgctggcgtcgacctcggcgctgcggtg
ctcgccgcgaaggagacggggctgctcgtcgcagggggcggtcacgcgatggcggcggga
ctgaccgtcgccgccgaccgcatcgacgcgctcggcgccttcctaagcgaccggctcgcc
gccgacgtcgagcgggcgagcggcgacaaggcgctgctgatcgacgccgtgctcgcgccg
cgcggcatcagcccgctgtggtgcgaagcgatcgacagcgcggggccctatggcgccggc
tggcccgcgccgcgcgtcgcgaccggcccggtgcgtatcgtcgaggcggggatcgtcggc
accgatcacctgcgcctgatcgtcgcgggcgacgacggtgcgcgtttcaaggcgatcgcc
ttccgcagcgccgaaggcctgctcggccagacgctgctccacgcgcgcggcggccgcaag
ctgtggctcgcaggccgcgcgaaacgcgacgactggggcagccgccccgccgccgaactg
cacctcgaggatgccgcctgggccgactga
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