Streptomyces goshikiensis: PET44_11410
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Entry
PET44_11410 CDS
T09307
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgk
Streptomyces goshikiensis
Pathway
sgk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PET44_11410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgk03019
]
PET44_11410
03009 Ribosome biogenesis [BR:
sgk03009
]
PET44_11410
Enzymes [BR:
sgk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PET44_11410
Messenger RNA biogenesis [BR:
sgk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PET44_11410
Ribosome biogenesis [BR:
sgk03009
]
Prokaryotic type
rRNA processing factors
PET44_11410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WBY20182
LinkDB
All DBs
Position
complement(2654606..2658595)
Genome browser
AA seq
1329 aa
AA seq
DB search
MLNNENTTPAAGNADGDSPSDNLPPRRRRRAASRPAGPPGATAAAATASDEAAPAAAAAA
APVVEEPAAAPAPRARRRATRAVAAPETAAADTVVEAAPAAAAAPVVEEPAAAPAPRARR
RATRAVAAPEAPAADVVEAAPVVEEPAAAAPAPRARRRATRAVAAPETAAADVVVEAAPA
AAAPVVEEPAAAPAPRARRRATRAVAAPETAAADVVVEAAPAAAAPVVEEPAAAPAPRAR
RRATRAVAAPAAEAAAETPAVVEEPAAAKATVTVADAVDSPKRGGRRRATRSATPAAPVQ
QAPAPAAEAEAPSGPARGRRAARPAVAVFQAPVFAEPMFQTPETAAMAAAAAAAATRAEE
AEEEEEEAEVEAEAVQAPAAQPAGRRRRRGRGAAAEPAAPAAESGPLTVADVEQAEIEEP
EAEAADLDEDETDGERPSRRRRRGGRRRRRGESADLDDSAEEEGETEAAEQEADGDEDSA
EDDDEDNGASGSSSSRRRRRRRRRSGDSAADAEAGEEDGVRTVVKVREPRPAREKAEPSD
EVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQAGERTQIG
VLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEA
LGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISR
KLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQIS
TSSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWETIHGYVNHVAPDLADRLSRWTS
EVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGKFTGQGGNLEETVT
RNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEVT
SLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMETPTVVGGGGNGKRAKRRGGKSES
DQHEHEHVTGTVEADSFEAETEAEVAAEAAAPVALPEPEFVADEELYSNPAEAEAAVSGR
RNRRRATRKATAAAGAPRTAAAPAPAVEAEPVTAPADTVLEPAAEAVTEAAPAPEAVAEA
VADEAAPKGRTRRRATRKATAPAPVAEAEPVVVAEPEPEPVVEPEPEPVVVETPAEPVAD
AAPARPRRRATRKATAPAGSPAGAAEAAVVVVEAAPVAEPEPVAAEPAAEAEAEPEAAPV
KKAARKAPAKKATTTAKKAPAKKAAAAKTTAKKTVAKKTTVKKTAAKRTTKKTAAAEQTA
PSVSAPTED
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacaacgagaacaccacccccgccgccggcaacgccgacggcgacagccccagc
gacaacctgcccccgcgcaggcgtcgccgcgcggcttcccggcccgccggcccgcccggt
gcgacggctgccgccgccaccgcttccgacgaggccgctccggccgccgctgccgctgcc
gctccggtcgtggaggagcccgccgctgctccggcgccgcgtgcccgtcgtcgtgccacc
cgtgccgtcgccgctccggagaccgccgccgctgacacggtcgtcgaggccgccccggcc
gccgctgccgctccggtcgtggaggagcccgccgccgctccggcgccgcgtgcccgtcgc
cgtgccacccgcgccgtcgccgctccggaggccccggccgccgatgtcgtcgaggccgct
ccggtcgtggaggagccggctgctgccgcccccgcgccgcgtgcccgtcgtcgtgcgacg
cgtgccgtcgccgctccggagaccgccgccgctgacgtggtggtcgaggccgctccggcc
gctgccgctccggtcgtggaggagcccgccgccgctccggcgccgcgtgcccgtcgtcgt
gccacccgtgccgtcgccgctccggagaccgccgccgctgacgtggtggtcgaggccgct
ccggccgctgccgctccggtcgtggaggagcccgccgccgctccggcgccgcgtgcccgt
cgccgtgccacccgcgccgtcgccgccccggccgccgaggccgccgcggagacgccggcc
gtcgtcgaggagcccgccgccgccaaggccaccgtcacggtcgccgacgccgtggactcc
ccgaagcgcggcggccgccgccgcgccacccgctccgccactccggccgcccccgtacag
caggcgcccgcgcccgccgccgaggccgaggcgccctccggtccggcccgtggccgtcgc
gccgcgcggcccgccgtggccgtgttccaggccccggtcttcgccgagccgatgttccag
accccggagacggccgccatggccgccgcggccgctgccgccgccacccgcgccgaagag
gccgaggaggaagaggaggaggccgaggtcgaggccgaggccgtccaggcccccgccgcg
cagcccgccggccgtcgccgccgccgtggccgcggcgccgccgccgagcccgccgctcct
gccgccgagtccggtccgctgaccgtggccgacgtggagcaggccgagatcgaggagccg
gaggccgaggccgccgacctcgacgaggacgagaccgacggcgagcgcccgtcgcgccgc
cgccgtcgcggtggccgccgccgtcgccgtggtgagtccgccgacctcgacgactccgcc
gaggaagagggcgagaccgaggccgccgagcaggaggccgacggggacgaggactccgcc
gaggacgacgacgaggacaacggggcctccggctccagctccagccgtcgtcgccggcgc
cgtcgccgccgcagcggtgactccgccgcggacgccgaggcgggcgaggaggacggcgta
cgcaccgtcgtcaaggtccgcgagccgcgcccggcccgcgagaaggccgagccgtccgac
gaggtgcagtccatcaagggctcgacccgtctggaggcgaagaagcagcgccgccgcgag
ggccgcgagcagggccgccgccgcgtcccgatcatcaccgaggccgagttcctggcccgc
cgcgaggccgtcgagcgcgtgatggtcgtccgccaggccggcgagcgcacccagatcggc
gtccttgaggacaacgtgctcgtcgagcactacgtcaacaaggaagaggccacctcgtac
gtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtccatggaggccgccttc
atcgacatcggcaagggccgcaacgcggtcctgtacgccggtgaggtcaacttcgaggcg
ctcggcatggccaacgggccgcgccgcatcgagtccgccctcaagtccggccagtcggtc
ctggtgcaggtcaccaaggacccgatcggccacaagggcgcccgcctgaccagccaggtc
tcgctgcccggccgctacctggtctacgtgcccgagggctcgatgaccggcatcagccgc
aagctgcccgacaccgagcgcgcgcgtctgaagaccatcctcaagaagatcgtccccgag
gacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgc
gacgtcgagcgcctgcaggcccagtgggaggacatccagaagaagtcgaagcagatctcg
acctcttcgccgagcctcctgtacggcgagccggacatgaccgtccgcgtcgtgcgcgac
atcttcaacgaggacttctcgaaggtcatcgtcagcggtgacggcgcctgggagaccatc
cacggctacgtgaaccacgtggccccggacctggccgaccggctgtcccgctggacctcc
gaggtcgacgtcttcgcgacgtaccggatcgacgagcagctcgccaaggcgctcgaccgc
aaggtgtggctgccctcgggcggctccctcgtgatcgacaagaccgaggcgatgatcgtc
atcgacgtcaacaccggcaagttcaccggtcagggcggcaacctcgaagagaccgtcacc
aggaacaacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctgggc
ggcatcgtcgtcatcgacttcatcgacatggtcctggagtccaaccgcgacctggtgctg
cggcgcatgctggagtgcctgggccgcgaccgcaccaagcaccaggtggccgaggtcacc
tcgctgggcctggtccagatgacccgcaagcgggtgggccagggtctgctggagtccttc
tccgagacctgcgtccactgcaacgggcgcggtgtgatcgtgcacatggagacgccgacc
gtggtcggcggcggtggcaacggcaagcgcgccaagcgccgcggcggcaagtccgagtcc
gaccagcacgagcacgagcacgtgaccgggacggtcgaggcggattccttcgaggccgag
accgaagcggaggtggccgccgaggccgccgcgccggtcgcactgccggagccggagttc
gtcgcggacgaggagctgtacagcaacccggccgaggcggaggccgccgtgagcggtcgc
cgcaaccggcgccgtgccacccgtaaggcgaccgctgccgcgggcgccccgcggaccgcg
gcggctccggcccccgcggtggaggccgagccggtgaccgcgcccgccgacaccgtcctg
gagccggccgccgaggccgtcaccgaggccgccccggcgccggaggccgtcgccgaggcc
gtggccgacgaggccgcgccgaagggccgtacccgccgccgcgccacccgcaaggccacg
gcgccggccccggtcgccgaggccgagccggtcgtggtggcggagcccgagcccgagccg
gtcgtggagcccgagcccgagccggtcgtcgtcgagaccccggccgagcccgtcgccgac
gcggccccggcccgtccgcgccgccgtgccacccgtaaggccaccgcccccgccggttcc
ccggcgggcgcggccgaggcggccgtcgtggtcgtcgaggcggccccggtggcggagccg
gagcccgtggcggccgagcccgccgcggaggccgaggccgagcccgaggcggcgccggtc
aagaaggccgcccgcaaggccccggccaagaaggcgaccaccacggcgaagaaggccccg
gccaagaaggcggccgcggccaagacgaccgccaagaagaccgtcgccaagaagacgacg
gtgaagaagaccgctgcgaagcggacgacgaagaagaccgccgcggcggagcagacggcc
ccgtccgtctccgctccgaccgaagactga
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