Streptomyces goshikiensis: PET44_15650
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Entry
PET44_15650 CDS
T09307
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sgk
Streptomyces goshikiensis
Brite
KEGG Orthology (KO) [BR:
sgk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgk03019
]
PET44_15650 (hrpA)
Enzymes [BR:
sgk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PET44_15650 (hrpA)
Messenger RNA biogenesis [BR:
sgk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PET44_15650 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
SLFN-g3_helicase
nSTAND3
T2SSE
NACHT
AAA_30
ResIII
NTPase_1
TsaE
PhoH
UvrD-helicase
SRP54
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WBY20930
LinkDB
All DBs
Position
3602060..3606001
Genome browser
AA seq
1313 aa
AA seq
DB search
MSTSFAALQTLLGEISLRDAHRLGRRLEGARRIRKPEAKQAVLDEIAAEAGKAAARLAGR
ASRMPEVTYPENLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERIAEELKSEIGQTVGWKVRFTDQVDQDATFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVIVTSATIDPERFSRHFGE
APIVEVSGRTYPVEVRYRPLLEEDAEEAADSDRDQITAICEAVDELQGEGPGDVLVFLSG
EREIRDTADALNKRNLRFTEVLPLYARLSHAEQHRVFQRPPAGTTRRIVLATNVAETSLT
VPGIKYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLYSEDD
FLSRPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALD
PSEKDAHKRLTPMGRQLSQLPVDPRLARMVVEADKNNCVREVMVIAAALSIQDPRERPSD
KQTQADQNHARFKDETSDFLSFLNMWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQD
IYSQLRTVAKSMGIHVNEADAPEQHVHVSLLAGLLSHIGLKDTDKNEYLGARSAKFAIFP
GSALFKKQPKFMMSAELVETSRLWARVNAKVEPEWVEPLAQHLIKRTYSEPHWEKDQAAV
MAYEKVTLYGVPIVAQRKINYGRIDAEVSRELFIRNALVEGDWRTHHKFYADNRKLLTEV
EELENRARRRDIVVDDETLFDFYDQRIPEHVVSGAHFDSWWKHKKRDEPELLDFEREMLL
TEKAAGVTKADYPDSWRQGQLKFRVTYQFEPGADADGVTVHVPLQVLNQVTDEGFDWQIP
GLREEVVTELIRSLPKPIRRHYVPAPNFASRFLDTAVPLQEPLPVTLARELQRMVGVPVS
AEDFDLSRIPDHLKITFRIVDERRKNLAEDKDLEALRLRLKPKARQALSKAAAATAERAG
GESVERTGLTDWTIGTLSRVFETRRAGQPVKAYPALVDQGASVSVRLFDTEAEQQQAMWL
GTRRLILLGIPVNPAKFASDKLTNQQKLALSRNPHGSVQALFEDCATAATDRLIAAHGGP
AWDEASFRKLFDAVRADLVDTTVRTVDQVQQVLAAWQACERRLKATNSLALMANVQDAKT
QLAALMPAGFVTLTGLKRLPDLMRYLVAVDRRLQQMPTGVQRDTTRMEKVHEMRDEYLWL
LEQLPKGRPVPEAVTEIRWMIEELRVSYFAHALGTAYPISDKRIVKAVDAAAP
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgccctgcagacgcttctcggtgagatctcgctccgtgacgcg
caccgcctcggccgccgcctcgaaggcgcccgccgtatccgcaagcccgaggccaagcag
gccgtgctcgacgagatcgccgcggaggccgggaaagccgccgcgcgactggccggccgt
gcctcgcggatgccggaggtcacgtatcccgagaacctgcccgtcagccagaagaaggac
gagatcgccgaggcgatacgcgaccaccaggtcgtgatcgtcgcgggcgagaccggctcc
ggcaagaccacgcagatccccaagatctgcatggagctgggccgcggcgtccggggcatg
atcgggcacacccagccccgccggatcgcggcgcgcaccgtcgcggagcgcatcgcggag
gagctgaagtccgagatcggccagacggtcggctggaaggtccggttcaccgaccaggtg
gaccaggacgccaccttcgtgaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcccacgagcggtcc
ctcaacatcgacttcctgctcggctacctcgccacgctgctgcccaagcgccccgacctc
aaggtgatcgtcacctccgcgacgatcgacccggagcgcttctcccggcacttcggcgag
gccccgatcgtcgaggtcagcgggcgtacgtatccggtggaggtccgctaccggccgctg
ctggaggaggacgccgaggaggcggcggactccgaccgggaccagatcaccgcgatctgc
gaggccgtggacgagctccagggcgagggccccggcgacgtgctcgtcttcctgtcgggc
gagcgcgagatccgcgacacggcggacgcgctcaacaagcggaacctccgcttcaccgag
gtcctgcccctctacgcgcgcctctcgcacgccgagcagcaccgggtgttccagcggccc
cccgcgggaacgacccgccggatcgtcctcgcgaccaacgtcgccgagacctccctgacc
gtccccggcatcaagtacgtgatcgacccgggcaccgcccggatctcccgctacagccac
cgcaccaaggtgcagcggctgcccatcgagcggatcagccaggcgagcgccaaccagcgc
aagggccgctgcggccgcaccagcgacggcatctgcatccggctgtactccgaggacgac
ttcctctcccgtccggagttcacggacgccgagatcctgcgcaccaacctggcctccgtc
atcctccagatgaccgcggccggcctcggcgagatcgagaagttccccttcatcgacccg
ccggaccaccgcaacatccgcgacggcgtccagctgctccaggagctcggcgcgctggac
ccctccgagaaggacgcccacaagcggctcacgccgatgggccggcagctctcgcagctc
ccggtggacccgcggctcgcccgcatggtcgtggaggcggacaagaacaactgcgtccgc
gaggtcatggtcatcgcggcggccctgtccatccaggacccgcgcgagcgcccgtcggac
aagcagacgcaggcggaccagaaccacgcccgcttcaaggacgagaccagcgacttcctc
tcgttcctgaacatgtggcgctacgtccgcgagcagcagaaggagcgcggctcgtcctcc
ttccgccggatgtgcaagcaggagtacctgaacttcctgcggatccgcgagtggcaggac
atctactcgcagctgcgtacggtcgccaagtccatggggatccacgtcaacgaggccgat
gccccggagcagcacgtccacgtgtcgctgctggcgggtctgctctcgcacatcggcctg
aaggacaccgacaagaacgagtacctgggcgcccggtccgccaagttcgcgatcttcccg
ggctccgcgctgttcaagaagcagccgaagttcatgatgtcggcggagctggtggagacc
tcgcggctgtgggcccgggtcaacgccaaggtggagcccgagtgggtcgagcccctggcc
cagcacctgatcaagcgcacgtacagcgagccgcactgggagaaggaccaggcggcggtg
atggcgtacgagaaggtcacgctgtacggcgtgccgatcgtggcccagcggaagatcaac
tacggccggatcgacgccgaggtctcgcgcgagctgttcatccgcaacgcgctcgtcgag
ggcgactggcggacccaccacaagttctacgccgacaaccgcaagctcctcaccgaggtg
gaggagctggagaaccgggcccggcgccgcgacatcgtcgtggacgacgagaccctgttc
gacttctacgaccagcggatccccgagcacgtggtgtccggggcgcacttcgactcgtgg
tggaagcacaagaagcgggacgagcccgaactgctcgacttcgagcgcgagatgctgctg
accgagaaggcggccggggtcaccaaggccgactacccggactcctggcggcaggggcag
ctgaagttccgggtgacctaccagttcgagccgggcgccgacgcggacggtgtcaccgtg
cacgtgccgctccaggtgctgaaccaggtcaccgacgagggcttcgactggcagatcccg
ggtctgcgggaagaggtcgtcaccgagctgatccggtcgctgccgaagccgatccgccgg
cactacgtgcccgcgccgaacttcgcctcgcgcttcctggacacggccgtgccgctccag
gagccgctgccggtgacgctggcacgcgagctccagcggatggtgggggtcccggtgtcc
gccgaggacttcgacctgtcccggatcccggaccacctgaagatcactttccggatcgtt
gacgagcggcgcaagaacctcgccgaggacaaggacctggaggccctgcggctgcggctg
aagccgaaggcccgccaggccctctccaaggccgccgcggccaccgccgagcgggcgggc
ggggagtcggtggagcgcaccgggctgaccgactggacgatcgggacgctgagccgggtc
ttcgagacccggcgggccggccagccggtgaaggcctacccggcgctggtggaccagggc
gcgagcgtctccgtacggctcttcgacaccgaggccgagcagcagcaggcgatgtggctg
ggcacccggcggctgatcctgctgggcatcccggtgaacccggcgaagttcgcctcggac
aagctgaccaaccagcagaagctggccctctcgcgcaatccgcacggctccgtccaggcg
ctgttcgaggactgcgcgacggcggccaccgacaggctgatcgccgcgcacggcggtccg
gcctgggacgaggcctccttccggaagctcttcgacgcggtccgggccgacctcgtggac
acgacggtgcggacggtggatcaggtccagcaggtgctggcggcctggcaggcctgcgag
cggcgcctgaaggcgaccaacagcctggccctgatggcgaacgtgcaggacgcgaagacg
cagctggcggcgctgatgccggccggcttcgtgaccctgaccgggctgaagcggctgccg
gacctgatgcgctacctggtggcggtcgaccgccggctccagcagatgccgacgggcgtc
cagcgcgacaccacgcgcatggagaaggtccacgagatgcgggacgagtacctgtggctg
ctggagcagctgccgaagggccggcccgtgccggaggcggtcaccgagatccgctggatg
atcgaggagctgcgggtcagttacttcgcgcacgcgctcgggacggcgtacccgatctcc
gacaagcggatcgtcaaggcggtggacgcggcggccccgtga
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integrated database retrieval system
