Streptomyces goshikiensis: PET44_19365
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Entry
PET44_19365 CDS
T09307
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgk
Streptomyces goshikiensis
Pathway
sgk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PET44_19365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgk03021
]
PET44_19365
03400 DNA repair and recombination proteins [BR:
sgk03400
]
PET44_19365
Enzymes [BR:
sgk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PET44_19365
Transcription machinery [BR:
sgk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PET44_19365
DNA repair and recombination proteins [BR:
sgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PET44_19365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TarH
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WBY21580
LinkDB
All DBs
Position
4384206..4388105
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDDERRTRDLPSLEAHVSVERQQIENRRDADLEGRAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWARFKNLKVQDLEGDELL
YRELRDRFGTYFDGCMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNKPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDVKGE
GRAFGSTAEAIMAFDAGELALQSSVDIRFPVGTIPPRGWVAPVAEEGEQEFQPGDSFRLK
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAISDVVVPEAKKAIVAGYEAMDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLKIGVKD
EAGVLRKADDVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALIANGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVITPDDGSEETAFPISKRAKV
IVHEGDHVEVGQKLTMGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNG
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cgaacctggtcgcacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgtcgtgagcggatgggccacatcgagcttgccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgccttggctacctgctggacctc
gcgccgaaggacctcgaaaaggtcatctacttcgccgcgtacatgatcacgttcgtcgac
gacgagcgccgcacccgcgacctcccgtcgctggaggcgcacgtctccgtcgagcgccag
cagatcgagaaccgccgtgacgcggacctcgaaggccgtgccaagaagctcgagaccgac
ctggccgagcttgaggccgagggcgcgaaggccgacgtacgccgcaaggtgcgcgaaggt
gccgagcgcgagatgaagcagctccgtgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtctgggcccgcttcaagaacctcaaggtccaggacctcgaaggcgacgagctgctc
tatcgcgagctgcgtgaccgcttcggcacgtacttcgacggctgcatgggcgccgccgcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacaagcccaagggcatggttctggactgcgtgccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcc
ctcttcgacaacggtcgtcgtggtcgcccggtgaccggtcccggtaaccgtccgctgaag
tccctgagcgacatgctcaagggcaagcagggtcgattccgtcagaaccttctcggcaag
cgcgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgtggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggcgaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgtctcggcatccaggccttcgagccccagctggtcgaaggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcacgatgccgacccaggac
atggtcctcggtctgttcttcctgaccaccgacggtgagctccgtgacgtcaagggcgag
ggccgcgcgttcggctcgaccgccgaggcgatcatggcgttcgacgccggcgagctcgcg
ctgcagtcgtccgtcgacatccgcttcccggtgggcaccatcccgccgcgcggctgggtg
gcgccggtcgccgaagagggcgagcaggagttccagccgggtgacagcttccgtctgaag
acgaccctgggtcgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggcggagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttccactgggcgacc
cgttcgggcgtcaccgtggccatctccgacgtcgtcgtgcccgaggccaagaaggccatc
gtcgcgggctacgaggcgatggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtt
gccgaggcgatgaacgcgaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcgacagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtccttccgtgagggcctcacc
gttctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctcacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggcctcaagctcaagatcggtgtcaaggac
gaggcgggtgtcctccgcaaggcggacgacgtcgagacctccgtgtacgcccgcatgctg
gccgaggacgtcgtcatcgacggcaaggtcatcgcgccggcgaacgtggacctcggtgac
gtgctcatcgacgccctcatcgcgaacggcgtcgaggaggtcaagacccgctcggtcctg
acctgcgagtccgcggtcggcacctgtgccttctgctacggccgctcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacg
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggtgtcgccccg
atctccgaggccgccggccgcgtgcggatcgaggagaccgagaagacgaagaagatcgtc
atcacgcccgacgacggcagcgaggagacggcgttcccgatctccaagcgcgccaaggtc
atcgtgcacgagggcgaccacgtcgaggtgggccagaagctcaccatgggtgccaccaac
ccgcacgacgtgctgcgcatcctcggccagcgtgccgtccaggtccacctggtcggcgaa
gtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctcctgccg
ggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggc
ggacaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gaatcctggctgtcggccgcctccttccaggagacgacccgagtcctgacggatgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtcgagcccaccgaagag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgcccttcggc
accggctccggccaggctgtcccgctggaggactacgactacggcccgtacaacggctga
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integrated database retrieval system
