Streptomyces goshikiensis: PET44_24360
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Entry
PET44_24360 CDS
T09307
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sgk
Streptomyces goshikiensis
Pathway
sgk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PET44_24360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgk03019
]
PET44_24360
03400 DNA repair and recombination proteins [BR:
sgk03400
]
PET44_24360
Enzymes [BR:
sgk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PET44_24360
Messenger RNA biogenesis [BR:
sgk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PET44_24360
DNA repair and recombination proteins [BR:
sgk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PET44_24360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
DUF8096
PglZ_C
Motif
Other DBs
NCBI-ProteinID:
WBY22486
LinkDB
All DBs
Position
complement(5483892..5486051)
Genome browser
AA seq
719 aa
AA seq
DB search
MNADLRSSADSVLARLVGDPTGTARLREDQWRAIEALVADKRRALVVQRTGWGKSAVYFV
ATSLLRASGAGPTVIVSPLLALMRNQVEAAARAGIRARTINSANPEEWEGIQAEVAAGEV
DVLLVSPERLNNPDFRDQVLPKLSAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLADLP
PGVPVLATTATANARVTADVAEQLGTGAGTDALVLRGPLDRESLSLAVLPLPDAAHRLAW
LADHLGELPGSGIIYTLTVAAAEEVTTYLRHRGHTVSSYTGKTENADREQAENDLQANRV
KALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGREDEAI
WQYFASVAFPPEQQVRRTLAVLADAGRPLSLPALEPLVDLRRTRLETMLKVLDVDGAVHR
VKGGWTATGEPWVYDAERYAWVARQRAAEQQAMRDYAASTGCRMEFLRRQLDDEEAAPCG
RCDNCAGARFTAAVSGTALDTARGELGRPGVELEPRKMWPTGLAAVGVDLKGRIPAGEQS
SAGRALGRLSDIGWGNRLRPMLAPQAPDQPIPDDVAQAVVAVLADWARGPGGWASGAPDA
PARPVGVVALPSRGRPQLVGSLAARIAEVGRMPLLGTIAYTDQVPEFGLPSSNSAQRVRG
LHQALTVPPALAEALAGAAGPVLLVDDRAESGWTLAVAARLLRRAGAKEVFPLVLALQP
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagacctgaggtcctcagccgattccgtactcgcccgcctggtgggcgatccg
acgggcaccgctcggctgcgcgaggaccagtggcgggcgatcgaagccctcgtcgcggac
aagcgccgcgcgctggtcgtccagcgcacgggctggggcaagtccgccgtgtacttcgtc
gccacctcgctgctgcgggcgagcggcgcgggccccaccgtgatcgtctccccgctgctc
gcgctgatgcgcaaccaggtcgaggcggcggcgcgcgccggcatccgcgcccgcaccatc
aactccgccaaccccgaggagtgggagggcatccaggccgaggtcgccgccggcgaggtc
gacgtcctgctcgtgagtcccgagcggctgaacaaccccgatttccgcgaccaggtgctg
cccaagctctccgcggccaccggcctgctcgtggtggacgaggcccactgcatctccgac
tgggggcacgacttccgccccgactaccggcgactgcgcacgatgctggccgacctcccg
ccgggcgtcccggtgctggcgacgaccgccacggccaacgcccgggtgaccgccgatgtc
gccgagcagctcggtaccggcgccgggacggacgcgctggtgctgcgcggcccgctggac
cgggagagcctgagcctggcggtcctcccgctgcccgacgcggcgcaccgcctcgcctgg
ctcgccgaccacctgggcgagctccccggctccggcatcatctacacgctgaccgtggcc
gccgccgaggaggtcaccacctacctccgccaccgcgggcacacggtgtcctcgtacacc
gggaagaccgagaacgccgaccgcgagcaggccgagaacgacctccaggcgaaccgggtg
aaggcgctggtggccacctcggccctgggcatgggcttcgacaagcccgacctcggcttc
gtggtgcacctgggctcgccctcctcccccatcgcctactaccagcaggtgggccgcgcc
ggccgcggcgtggagcacgcggaggtactgctgctcccgggccgggaggacgaagcgatc
tggcagtacttcgcctcggtggccttccccccggagcagcaggtgcggcggaccctcgcc
gtcctggcggacgcgggccggccgctgtcgctgcccgccctggaacccctggtcgacctg
cggcgcacccgcctggagaccatgctcaaggttctcgacgtggacggcgccgtgcaccgg
gtcaagggcggctggaccgccacgggcgagccgtgggtgtacgacgccgagcgctacgcc
tgggtggcccggcagcgggccgccgaacagcaggcgatgcgcgactacgcggcctcgacc
ggctgccggatggagttcctgcgccgccagctcgacgacgaggaggcggcgccctgcggc
cgctgcgacaactgcgccggcgcccggttcaccgcggccgtctcgggcaccgcgctggac
accgcgcgcggcgaactcggccgccccggcgtggagctggagccgcgcaagatgtggccg
acgggactcgccgccgtcggcgtggacctcaaggggcggatcccggcgggtgaacagtcc
tcggccggccgggcgctgggccggctgtccgacatcggctggggcaaccggctgcgcccg
atgctcgccccgcaggcgcccgatcagccgattccggacgacgtcgcgcaggccgtggtc
gccgtcctcgcggactgggcccgcggtccgggcggctgggcctccggagccccggacgca
cccgcccgtcccgtcggtgtggtggccctgccctcccgcggccggccgcagctggtgggc
tcgctcgccgcgcggatcgcggaggtcgggcggatgccgttgctcggcaccatcgcctac
acggatcaggttccggagttcggcctgccctcatccaacagcgcccagcgggtacgaggc
ctccaccaggccctgaccgtgcccccggcgctcgcggaggcgctcgccggggccgcgggt
ccggtgctcctcgtggacgaccgcgcggagagcggctggaccctcgcggtggccgcccga
ctgctgcggcgggcaggcgcgaaggaggtgtttcccctggtactcgcgctccagccgtag
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